Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00230 ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATACCATCGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGGCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTCAAATTCCTAA 1059 53.16 MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLMSNS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1226770 1227828 + Cp4.1LG06g02240.1 Cpe06g00230 471010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00230 352 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
Cpe06g00230 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 348 - -
Cpe06g00230 352 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Cpe06g00230 352 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Cpe06g00230 352 Gene3D - 108 181 - -
Cpe06g00230 352 MobiDBLite consensus disorder prediction 1 21 - -
Cpe06g00230 352 PANTHER UNKEMPT FAMILY MEMBER 8 348 IPR045234 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00230 Cpe11g00092 CCT
Cpe06g00230 Cpe11g00092 ECH
Cpe06g00230 Cpe07g00542 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01075 Cpe-Chr4:9425986 Cpe06g00230 Cpe-Chr6:1226770 1.04E-107 dispersed
Cpe06g00230 Cpe-Chr6:1226770 Cpe15g00814 Cpe-Chr15:8117133 1.28E-63 dispersed
Cpe11g00092 Cpe-Chr11:489610 Cpe06g00230 Cpe-Chr6:1226770 3.22E-85 wgd
Cpe18g00382 Cpe-Chr18:5117200 Cpe06g00230 Cpe-Chr6:1226770 3.57E-108 wgd
Cpe02g00246 Cpe-Chr2:1280451 Cpe06g00230 Cpe-Chr6:1226770 6.90E-56 wgd
Cpe06g00230 Cpe-Chr6:1226770 Cpe07g00542 Cpe-Chr7:3599148 5.02E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49645 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00230 - - cpep:111797621 705.671