Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00238 | ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGATTTAATGAGCACCAGCGATTGAACGATGCTCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCATCTTCTTCTGGGTCATCCTCGTCTCTGTCTATGGCGGCTTCCACTACAATGGGGAGATTGGAGGCCGTTGAATCAGTCGTTGATCAGGTGACTTCTGGGGATGTGGGCGATGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTACAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAGGACACTGAATCCGCTCAGATCGATGCCGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAATCTCCGGCAGTCAAGCTCTTGCCGAATTTCTCTCGCTTCAGTATTGGGTCATCGGTTTGAATGCTGAGTGGGGAATTGCTATTTTGCAACTCGTGTTCCATTTAACTGCTACTGGATTGGGGAATTATGGTTATGGGGATTTTTCACTTTCTCGTTTTCAAAGTGAGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTACGACTTATATGGCATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACTGTTAGTCGATCTTAAAGAAATATGCGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATTCCGAGCTTCAACGTTTGGAAAGACAAGCATATAACATATTCATGGAATGTAGAGTTTCTGAGTATGGCTTCGTTTTAAGTGGACTGGTTCAAAAGATTGCTGATCTAGTCGTGGCTAGAATGGGTGGTCCTGTTGAAGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAAATGCGTAGTTCTCTGAACACGATTATTCTACCACTCGGTCGTCTTGATATTGGACTTGCACGTCATCGAGCTTTGCTTTTCAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACCGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATAGCTTTGATAGGAGGCCTGCAGATGTTATCGAAATTCCTGAAGATACGACAGTTTTACAAAATGAAGGATCTAAAGCGGTGTCGATGGCATCTACTCAAGATGAAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAATATTAGGAGCTTCATTGAAGAAATTCAAACTGGGAGTTCTGACTATGATTTTGTGAAGCTTATAGAATTAGAAAGCAGCGCGTGTGAAAATTCATCAGGTGCATGTGATCAGTCCGCATCTGCACAAAAGAAAGTGAAAAAAGTGTCGAAGTATGTCATAAATGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTGCATGCTGTCTTGTTAGAAAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCCCAGGGTAATGGTGAAAGCAAAGAAACTTTCCAAATGTATCCAATCGATGGAAAAGGCGTAGACGTTGGGCTTCAGTGCCACCCTTATATTTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACGGAATCAGAGTTTTTGAACAATGTTGTCCATGGAAATAAGCAGAGAGTGTCTGCTGAGGGATCATCTGAAGAACAAACACCCGAGGCAAATGCAAACAAGCACAGCATATTTTGGCCCCACAATATGGAAAACAACAGATTTGTGTTCGTCGATGTTAATGGAGAAACAGGCAAATTGGCTGATGTTAATGGAACTTTTCATCGTGAGCACGTGGGTGGTGTTTCGTTGGCATCTGATGCTGACTCTCATAACAGACAATTAGGAAGTGTCTTCGTGAGTGAAGAAAGAAGATTTTTGAAAGATAAGAGTGATGGAACTCTTCAGTGCTTCGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATGGTAACCAGCGTGCTAGTGATGTCCGCAGTGAGACAATTGACCCAATATTAGGTGAGGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGTGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTGTCTGGTGCTGCTTTAGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTCGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCACATTTCTCTATCCTTACAGAGTTTCTACCCAGGTTGATTATGTTGCTTCTTTATTGTTCTTCTTTAACATTATTTCAGCTTAACGATTACGTCGTTCCATGTTCTGTAGATAAATGCTGCAATGTTTGTGATTTCGGTTTGTCACGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCGACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAACGAACCAGCCAACGAGAAGTGCGATGTGTATAGTTTTGGTGTGATACTGTGGGAGTTGACGACATGCTGCATACCATGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGACTGGAGATTCCAGAAAATGTTGATCCTGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGAACTCGCAACTGAGGCCGTCGTTCTCTCAGCTTATTACTCGACTGCGACGCCTTCAACGGCTTGTTCAGGAAACAAACTCCGAGAATCAAATGTCGGAGTGA | 2943 | 43.15 | MSRMKHLLRKLHIGGGFNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMAASTTMGRLEAVESVVDQVTSGDVGDGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSQALAEFLSLQYWVIGLNAEWGIAILQLVFHLTATGLGNYGYGDFSLSRFQSESYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDSELQRLERQAYNIFMECRVSEYGFVLSGLVQKIADLVVARMGGPVEDAEEMLRRWTLRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYSFDRRPADVIEIPEDTTVLQNEGSKAVSMASTQDEVANICNLISKEASDLDAQSKENIRSFIEEIQTGSSDYDFVKLIELESSACENSSGACDQSASAQKKVKKVSKYVINAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGESKETFQMYPIDGKGVDVGLQCHPYILASHGQSSATSTESEFLNNVVHGNKQRVSAEGSSEEQTPEANANKHSIFWPHNMENNRFVFVDVNGETGKLADVNGTFHREHVGGVSLASDADSHNRQLGSVFVSEERRFLKDKSDGTLQCFDLRENPHENLLEIDNGNQRASDVRSETIDPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRLIMLLLYCSSLTLFQLNDYVVPCSVDKCCNVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCCIPWKGLNPMQVVGAVGFQNRRLEIPENVDPAVAQIICDCWQTNSQLRPSFSQLITRLRRLQRLVQETNSENQMSE | 980 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1261090 | 1271084 | - | Cp4.1LG06g02390.1 | Cpe06g00238 | 471018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00238 | 980 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 192 | 387 | - | - | |
Cpe06g00238 | 980 | Pfam | Protein tyrosine and serine/threonine kinase | 739 | 817 | IPR001245 | GO:0004672|GO:0006468 | |
Cpe06g00238 | 980 | Pfam | Protein tyrosine and serine/threonine kinase | 844 | 962 | IPR001245 | GO:0004672|GO:0006468 | |
Cpe06g00238 | 980 | ProSitePatterns | Protein kinases ATP-binding region signature. | 745 | 767 | IPR017441 | GO:0005524 | |
Cpe06g00238 | 980 | Coils | Coil | 955 | 980 | - | - | |
Cpe06g00238 | 980 | MobiDBLite | consensus disorder prediction | 13 | 62 | - | - | |
Cpe06g00238 | 980 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 83 | 818 | - | - | |
Cpe06g00238 | 980 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 846 | 977 | - | - | |
Cpe06g00238 | 980 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 83 | 818 | - | - | |
Cpe06g00238 | 980 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 846 | 977 | - | - | |
Cpe06g00238 | 980 | CDD | STKc_MAP3K-like | 745 | 962 | - | - | |
Cpe06g00238 | 980 | Gene3D | Phosphorylase Kinase; domain 1 | 732 | 816 | - | - | |
Cpe06g00238 | 980 | Gene3D | Transferase(Phosphotransferase) domain 1 | 820 | 976 | - | - | |
Cpe06g00238 | 980 | ProSiteProfiles | Protein kinase domain profile. | 739 | 969 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe06g00238 | 980 | SUPERFAMILY | Protein kinase-like (PK-like) | 721 | 960 | IPR011009 | - | |
Cpe06g00238 | 980 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00257 | Cpe06g00238 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00238 | Cpe-Chr6:1261090 | Cpe20g00145 | Cpe-Chr20:821271 | 4.34E-72 | dispersed | |
Cpe02g00257 | Cpe-Chr2:1330695 | Cpe06g00238 | Cpe-Chr6:1261090 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62458 | PF14381 | EDR1 | 6.10E-69 | CL0125 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00238 | K04424 | - | csv:101214554 | 1491.86 |