Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00238 ATGTCGAGAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGATTTAATGAGCACCAGCGATTGAACGATGCTCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCTGGTTCATCTTCTTCTGGGTCATCCTCGTCTCTGTCTATGGCGGCTTCCACTACAATGGGGAGATTGGAGGCCGTTGAATCAGTCGTTGATCAGGTGACTTCTGGGGATGTGGGCGATGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTACAATTGGCTATGGCGATTAGCGCTTCCGATCCTGATTCGAGACAGGACACTGAATCCGCTCAGATCGATGCCGCCAAGCGGATGAGTCTTGGCTGTTCGCCTTCAATCTCCGGCAGTCAAGCTCTTGCCGAATTTCTCTCGCTTCAGTATTGGGTCATCGGTTTGAATGCTGAGTGGGGAATTGCTATTTTGCAACTCGTGTTCCATTTAACTGCTACTGGATTGGGGAATTATGGTTATGGGGATTTTTCACTTTCTCGTTTTCAAAGTGAGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTACGACTTATATGGCATTACTACAAATTCTAGCACCCGAGGAAAGATGCCACTGTTAGTCGATCTTAAAGAAATATGCGTGACAAGTGATATTGATTATGAAGTGATTTTGGTTAACCGCTTGCTTGATTCCGAGCTTCAACGTTTGGAAAGACAAGCATATAACATATTCATGGAATGTAGAGTTTCTGAGTATGGCTTCGTTTTAAGTGGACTGGTTCAAAAGATTGCTGATCTAGTCGTGGCTAGAATGGGTGGTCCTGTTGAAGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAAATGCGTAGTTCTCTGAACACGATTATTCTACCACTCGGTCGTCTTGATATTGGACTTGCACGTCATCGAGCTTTGCTTTTCAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACCGATGACGGAGCTGTGAACATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCTGTCAATTTTCGAATTATAGCTTTGATAGGAGGCCTGCAGATGTTATCGAAATTCCTGAAGATACGACAGTTTTACAAAATGAAGGATCTAAAGCGGTGTCGATGGCATCTACTCAAGATGAAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGATTTAGATGCTCAATCAAAAGAAAATATTAGGAGCTTCATTGAAGAAATTCAAACTGGGAGTTCTGACTATGATTTTGTGAAGCTTATAGAATTAGAAAGCAGCGCGTGTGAAAATTCATCAGGTGCATGTGATCAGTCCGCATCTGCACAAAAGAAAGTGAAAAAAGTGTCGAAGTATGTCATAAATGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTGCATGCTGTCTTGTTAGAAAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGACTCCCAGGGTAATGGTGAAAGCAAAGAAACTTTCCAAATGTATCCAATCGATGGAAAAGGCGTAGACGTTGGGCTTCAGTGCCACCCTTATATTTTAGCAAGCCACGGACAGTCTTCTGCTACTTCTACGGAATCAGAGTTTTTGAACAATGTTGTCCATGGAAATAAGCAGAGAGTGTCTGCTGAGGGATCATCTGAAGAACAAACACCCGAGGCAAATGCAAACAAGCACAGCATATTTTGGCCCCACAATATGGAAAACAACAGATTTGTGTTCGTCGATGTTAATGGAGAAACAGGCAAATTGGCTGATGTTAATGGAACTTTTCATCGTGAGCACGTGGGTGGTGTTTCGTTGGCATCTGATGCTGACTCTCATAACAGACAATTAGGAAGTGTCTTCGTGAGTGAAGAAAGAAGATTTTTGAAAGATAAGAGTGATGGAACTCTTCAGTGCTTCGATTTGCGTGAAAATCCGCATGAAAATTTGTTAGAAATTGATAATGGTAACCAGCGTGCTAGTGATGTCCGCAGTGAGACAATTGACCCAATATTAGGTGAGGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGTGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTGTCTGGTGCTGCTTTAGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTCGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCACATTTCTCTATCCTTACAGAGTTTCTACCCAGGTTGATTATGTTGCTTCTTTATTGTTCTTCTTTAACATTATTTCAGCTTAACGATTACGTCGTTCCATGTTCTGTAGATAAATGCTGCAATGTTTGTGATTTCGGTTTGTCACGTGTCAAGCAGAACACATTTCTGTCTTCAAAGTCGACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAACGAACCAGCCAACGAGAAGTGCGATGTGTATAGTTTTGGTGTGATACTGTGGGAGTTGACGACATGCTGCATACCATGGAAAGGTTTGAACCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGACTGGAGATTCCAGAAAATGTTGATCCTGCAGTTGCACAGATCATTTGCGATTGTTGGCAAACGAACTCGCAACTGAGGCCGTCGTTCTCTCAGCTTATTACTCGACTGCGACGCCTTCAACGGCTTGTTCAGGAAACAAACTCCGAGAATCAAATGTCGGAGTGA 2943 43.15 MSRMKHLLRKLHIGGGFNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSSSSLSMAASTTMGRLEAVESVVDQVTSGDVGDGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSISGSQALAEFLSLQYWVIGLNAEWGIAILQLVFHLTATGLGNYGYGDFSLSRFQSESYNVVNYDEKVMDGFYDLYGITTNSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDSELQRLERQAYNIFMECRVSEYGFVLSGLVQKIADLVVARMGGPVEDAEEMLRRWTLRSYEMRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYSFDRRPADVIEIPEDTTVLQNEGSKAVSMASTQDEVANICNLISKEASDLDAQSKENIRSFIEEIQTGSSDYDFVKLIELESSACENSSGACDQSASAQKKVKKVSKYVINAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQGNGESKETFQMYPIDGKGVDVGLQCHPYILASHGQSSATSTESEFLNNVVHGNKQRVSAEGSSEEQTPEANANKHSIFWPHNMENNRFVFVDVNGETGKLADVNGTFHREHVGGVSLASDADSHNRQLGSVFVSEERRFLKDKSDGTLQCFDLRENPHENLLEIDNGNQRASDVRSETIDPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRLIMLLLYCSSLTLFQLNDYVVPCSVDKCCNVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCCIPWKGLNPMQVVGAVGFQNRRLEIPENVDPAVAQIICDCWQTNSQLRPSFSQLITRLRRLQRLVQETNSENQMSE 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1261090 1271084 - Cp4.1LG06g02390.1 Cpe06g00238 471018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00238 980 Pfam Ethylene-responsive protein kinase Le-CTR1 192 387 - -
Cpe06g00238 980 Pfam Protein tyrosine and serine/threonine kinase 739 817 IPR001245 GO:0004672|GO:0006468
Cpe06g00238 980 Pfam Protein tyrosine and serine/threonine kinase 844 962 IPR001245 GO:0004672|GO:0006468
Cpe06g00238 980 ProSitePatterns Protein kinases ATP-binding region signature. 745 767 IPR017441 GO:0005524
Cpe06g00238 980 Coils Coil 955 980 - -
Cpe06g00238 980 MobiDBLite consensus disorder prediction 13 62 - -
Cpe06g00238 980 PANTHER SERINE-THREONINE PROTEIN KINASE 83 818 - -
Cpe06g00238 980 PANTHER SERINE-THREONINE PROTEIN KINASE 846 977 - -
Cpe06g00238 980 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 83 818 - -
Cpe06g00238 980 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 846 977 - -
Cpe06g00238 980 CDD STKc_MAP3K-like 745 962 - -
Cpe06g00238 980 Gene3D Phosphorylase Kinase; domain 1 732 816 - -
Cpe06g00238 980 Gene3D Transferase(Phosphotransferase) domain 1 820 976 - -
Cpe06g00238 980 ProSiteProfiles Protein kinase domain profile. 739 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00238 980 SUPERFAMILY Protein kinase-like (PK-like) 721 960 IPR011009 -
Cpe06g00238 980 MobiDBLite consensus disorder prediction 44 62 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00257 Cpe06g00238 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00238 Cpe-Chr6:1261090 Cpe20g00145 Cpe-Chr20:821271 4.34E-72 dispersed
Cpe02g00257 Cpe-Chr2:1330695 Cpe06g00238 Cpe-Chr6:1261090 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62458 PF14381 EDR1 6.10E-69 CL0125 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00238 K04424 - csv:101214554 1491.86