Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00240 ATGGCTCAACAACACAGAGTTATAATACAGAATAGCCATGGTGAAAAGCTTGTTGGAATCCTGCATGATACCGGATCAAGCGAGCTCGTTATTGTTTGCCATGGATTTCAGTCCTCGAAGGATCGCATTCCTATGGTGAACCTCGCCACTGCTTTAGAGAAAGAAGGGATGAGTGTTTTTCGTTTTGACTTTGCTGGAAACGGAGAAAGTGAAGGTTCATTCCAGTATGGCAACTACCGCAGAGAAGCTGATGATTTACGTGCTGTTGTGCAACATTTCCATGGAAAGGAACATACAGTGACCGCAATAATTGGACACAGTAAAGGGGGGAATGTAGTTCTCTTGTATGCTTCAAAGTATCGAGACATTCATACAGTTGTTAATATATCTGGCCGTTTTAACCTTGAAAGAGGGATTGAAGGTCGCTTAGGTAAAGAGTTTTTGCAAAGAATTAAGCAAAAAGGGTTTATTGATGTCAAGAATAGGAAAGGGAAGATCGAATATCGTGTCACTGAAGAAAGTTTAATGGACCGACTAACTACCGAGGTTCATGCAGCATGCTCAGCAATTCAGCCTGAAGATGCTGTCGAGTTTTCCAAGTCCATAGCAAATCATGTTCTATGCATCATGGAAGGGGCTGATCATGAATATACTTCTCACCAAGATGAATTGGCTTCAGTTGTTGTGAACTTCGTTAAAGCTAATCTTCATCTGCACAAAGATACAACCGAGCCGCAGCTGTGCAGAAAGCCCGACAGAGGTGGCCAGATGATTCTAGAAAAGGGTTGCACGCACAAAAGGCATCTTGGCAGTGGGAGTAGTCCCGATCACTACACATCAACAAAGGGTTTGGTTTCTTTACAGAAAAGAAAAGAAGCACGCGACAATGAGAGCGAGAAGGCGATCATTCTCAGAGACAGTACAAGCAAGGCAGTGAAACTGATGGAGCCCACCAACAAATACATGGCGCATGGCGCATGCTACTCTATCTTGATTCGGAGATCAACCTTGCAATCGGCGTCGGAGACGGGGGCTACCGTCGGCTGTTTCCCCTTCGGCGGTGTTCCTTTAATTCCTTCACATGTCACTCTGATTCCGACCTTTTTGCTGTTCACTCCTCCGATTTTCACCTTCACTTTCGTATCCATCTCGATCGTCAGAGGGGCGCCTCCTTTCTTCTTCAGATCCGATCTGAGGCTCGTAACGGAATCTGCGTCCAGATCTTCGGCGCCGGACATTAAGGATCGGAATACCGTTTGGTTCTTTGTGGCGCTGGTGAAAGCCGGGATCGAGCCATTGGCGAGGAGGACGGAATTGGAGAAGCAGGAGAGAGTGAAGGGGTCGTAG 1347 46.33 MAQQHRVIIQNSHGEKLVGILHDTGSSELVIVCHGFQSSKDRIPMVNLATALEKEGMSVFRFDFAGNGESEGSFQYGNYRREADDLRAVVQHFHGKEHTVTAIIGHSKGGNVVLLYASKYRDIHTVVNISGRFNLERGIEGRLGKEFLQRIKQKGFIDVKNRKGKIEYRVTEESLMDRLTTEVHAACSAIQPEDAVEFSKSIANHVLCIMEGADHEYTSHQDELASVVVNFVKANLHLHKDTTEPQLCRKPDRGGQMILEKGCTHKRHLGSGSSPDHYTSTKGLVSLQKRKEARDNESEKAIILRDSTSKAVKLMEPTNKYMAHGACYSILIRRSTLQSASETGATVGCFPFGGVPLIPSHVTLIPTFLLFTPPIFTFTFVSISIVRGAPPFFFRSDLRLVTESASRSSAPDIKDRNTVWFFVALVKAGIEPLARRTELEKQERVKGS 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1279966 1286804 - Cp4.1LG06g02380.1 Cpe06g00240 471020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00240 448 Pfam Serine aminopeptidase, S33 28 167 IPR022742 -
Cpe06g00240 448 Gene3D alpha/beta hydrolase 2 259 IPR029058 -
Cpe06g00240 448 SUPERFAMILY alpha/beta-Hydrolases 3 236 IPR029058 -
Cpe06g00240 448 PANTHER HYDROLASE, PUTATIVE-RELATED 2 240 - -
Cpe06g00240 448 PANTHER RE40534P-RELATED 2 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00240 K06889 K06889; uncharacterized protein - csv:101208876 416.387
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00262 Cpe06g00240 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01049 Cpe-Chr4:9255954 Cpe06g00240 Cpe-Chr6:1279966 1.23E-99 dispersed
Cpe18g00351 Cpe-Chr18:4918225 Cpe06g00240 Cpe-Chr6:1279966 3.53E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g94 Blo01g01464 . . . . Bpe02g00338 . . . . . . Car09g00288 . . . Cpe06g00240 . . . . . . . Cla05g01574 . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00591 . . . . . Cpe02g00262 Bhi09g03147 . . . Hepe01g1884 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001214 1 7 2 2 1 2 3 2 2 1 2 2 2 3 3 3 2 3 3 2 2 2 3 2 3 2 1 4 8 2 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00240 Cpe_Chr06 FPKM 1.613333 1.925336 2.02843 0.832382 7.876863 6.509703 6.338047 0.94357 0.0 0.792477