Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00243 ATGGGGGGTTCTGGGAAATGGAGGAAGGTCTTTACAGGACAGAGGAAGTCTGAGAAGGACGACAATGAGAAGTTGTGTAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGTATGGAAGGGTTACAAAGGGGCACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTCGTGCGCCTGATTCTTTTACTGCCGCCGTCGCCGCCGTCCTCCGTGCTCCGCCGAAGAATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGGATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGAGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGTTTGGTGAGGAAGCAGGCAGCTATTACACTGAGGTGCATGCAGGCTCTGGTTAGAGTCCAAGCTCGTGTCCGAGCGCGTCATGTGAGGATGTCGGTTGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCCTAAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACAATGGAAGATATCAAAGCTAAGTTACAAATGAAGCAATATGGAGCATTTAAGAGGGAAAGAGCAATTGCTTACTCTCTTGTTCAGAAGCAATTGAAGGCAACACCAAGCTCAACTTCGCAAATAAATGCATCGATTTACGCTCTTAAGAATTCCGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCTAAGCCATGGGAGTCAATGTTGAAAGAACAATCTCGCACTGATTCCATTGAGGTCACTCCACCACCTTCAAAGAAATGTATAGAGTCTATTGTACCTAAACATTCCATAGTTTCTGAACCAGGTTTGGTGAAGATTCGGAGAAACAATGTATCCACTAGGATATCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGTTCTTGTTCCAGCCCAAGTTCTGATTTCCGGTATGATGAGAGCTCTGTTTCATCTTCGATCTGCACGTCGACAACTCCTGCGTCGGGGAATGTTTTCTCATCCATTGAAAGACCTGAGAATAGCAGTTACAGTAGGCCAAGTTACATGAACCCTACAGAGTCGACGAAGGTGAAGCAGAAAACAAACAGTCACTTATCGCATCGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGGTTTCTCTAATGGGGATTCTAAGAGCAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTCATGCTGTCCACACGATTGGATAAGAATGGAACAAAGCTAAGATCATGA 1338 47.16 MGGSGKWRKVFTGQRKSEKDDNEKLCSKTKKWRLWRSPSGDLSSVWKGYKGAHKAASEGSDSPRAPDSFTAAVAAVLRAPPKNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAITLRCMQALVRVQARVRARHVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTMEDIKAKLQMKQYGAFKRERAIAYSLVQKQLKATPSSTSQINASIYALKNSEFDKNNWGWSWLERWMAAKPWESMLKEQSRTDSIEVTPPPSKKCIESIVPKHSIVSEPGLVKIRRNNVSTRISAKPPSSGQARSCSSPSSDFRYDESSVSSSICTSTTPASGNVFSSIERPENSSYSRPSYMNPTESTKVKQKTNSHLSHRVQRQSMDEYQFLQKSAGFSNGDSKSSAGSDSSVNPFKPFMLSTRLDKNGTKLRS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1295976 1298800 - Cp4.1LG06g02520.1 Cpe06g00243 471023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00243 445 MobiDBLite consensus disorder prediction 389 429 - -
Cpe06g00243 445 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Cpe06g00243 445 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Cpe06g00243 445 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Cpe06g00243 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Cpe06g00243 445 MobiDBLite consensus disorder prediction 309 382 - -
Cpe06g00243 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
Cpe06g00243 445 MobiDBLite consensus disorder prediction 1 23 - -
Cpe06g00243 445 MobiDBLite consensus disorder prediction 309 445 - -
Cpe06g00243 445 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Cpe06g00243 445 SMART iq_5 111 132 IPR000048 GO:0005515
Cpe06g00243 445 SMART iq_5 88 110 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00243 - - - csv:101210019 753.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00087 Cpe-Chr2:438656 Cpe06g00243 Cpe-Chr6:1295976 2.82E-22 dispersed
Cpe06g00243 Cpe-Chr6:1295976 Cpe13g00819 Cpe-Chr13:7295985 1.25E-44 dispersed
Cpe09g01069 Cpe-Chr9:9301579 Cpe06g00243 Cpe-Chr6:1295976 8.13E-22 dispersed
Cpe14g01046 Cpe-Chr14:8772549 Cpe06g00243 Cpe-Chr6:1295976 7.50E-11 transposed
Cpe18g00224 Cpe-Chr18:3887819 Cpe06g00243 Cpe-Chr6:1295976 4.26E-66 transposed
Cpe12g00611 Cpe-Chr12:6065899 Cpe06g00243 Cpe-Chr6:1295976 2.18E-80 wgd
Cpe02g00266 Cpe-Chr2:1377504 Cpe06g00243 Cpe-Chr6:1295976 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00243 Cpe_Chr06 FPKM 1.307891 1.533946 2.989427 2.589858 8.059013 7.677304 7.797392 1.113908 1.218923 1.012808