Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00252 ATGGACTTCGCCGACGACGCCGACAAGTCTTTCAGCGCCCCGACCCGTACCTACGTCCGGGACGCCAAGGCCATGGCAGCCACTCCGGCCGACGTCAAGGAGTATCCGAATTCCTATGTTTTTGTCGTCGACATGCCGGGGTTGAAGGTTGGTGACATCAAGGTTCAGGTAGAGGAAGACAATGTGCTACTGGTAAGTGGCGAGAGGAAGAGGGAGGAGGAGAAAGAAGGGGCTAAGTACGTAAGGATGGAGAGAAGAGTCGGCAAGTTTATGAGGAAATTTGTGTTGCCGGAAAATGCCAACACGGATGCCATTACGGCGGTTTGTCAGGACGGTGTGCTTACTGTGACTGTGCAAAAGTTGCCACCACCGGAGCCTAAGAAGCCCAAGATCGTTGAGGTCAAGGTCAATTGA 414 53.62 MDFADDADKSFSAPTRTYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKVGDIKVQVEEDNVLLVSGERKREEEKEGAKYVRMERRVGKFMRKFVLPENANTDAITAVCQDGVLTVTVQKLPPPEPKKPKIVEVKVN 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1345380 1345793 - Cp4.1LG06g02530.1 Cpe06g00252 471032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00252 137 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 21 137 IPR002068 -
Cpe06g00252 137 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 4 136 - -
Cpe06g00252 137 Pfam Hsp20/alpha crystallin family 31 135 IPR002068 -
Cpe06g00252 137 Gene3D - 1 135 IPR008978 -
Cpe06g00252 137 SUPERFAMILY HSP20-like chaperones 4 131 IPR008978 -
Cpe06g00252 137 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 4 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00252 K13993 HSP20; HSP20 family protein - rcu:8258553 203.756
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00279 Cpe06g00252 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00280 Cpe-Chr2:1453678 Cpe06g00252 Cpe-Chr6:1345380 5.40E-43 dispersed
Cpe03g01020 Cpe-Chr3:8356607 Cpe06g00252 Cpe-Chr6:1345380 8.92E-23 dispersed
Cpe06g00252 Cpe-Chr6:1345380 Cpe01g01064 Cpe-Chr1:6259438 3.85E-20 dispersed
Cpe02g00279 Cpe-Chr2:1452296 Cpe06g00252 Cpe-Chr6:1345380 1.54E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g127 . Blo12g01022 . . . Bpe02g00501 . . . . . . Car09g00304 . . . Cpe06g00252 . . . . . . . Cla05g01856 Cam05g1981 Cec05g1994 Cco05g2052 Clacu05g1973 Cmu05g1855 Cre05g1980 . . . . . . . . . . . . Bpe14g00274 . . . . . Cmo09g00355 Cma09g00355 . . . . Cpe02g00279 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00252 Cpe_Chr06 FPKM 19.437374 25.05423 15.52864 16.82095 7.930357 6.100134 8.913332 16.518497 17.873705 22.897509