Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00253 ATGAGCCTAGATGCCGCTGAGGATGAATCCACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACCGCCCTTTATCCTATTGTTGTTTTGAAAACTCGACTTCAGGTTTCTTCTACCAAGTTATCCTGCTTTAAAATGTCATATTCTATCATGCGCCATGAAGGCTTAAGAGGATTTTACAGAGGGTTTGGAACCTCTTTAATGGGAACTATCCCAGCTCGAGCCTTTTACATGGCAGCTCTTGAAGTTACCAAGAGTGGTGTTGGAAGTGCAACTATTAGGCTAGGTCTTTCAGACACCACAGCCATGGCTATAGCTAATGCAGCTGCAGGGTTGAGCTCTGCCATGGCTGCTCAATTGGTCTGGACTCCAGTAGATGTTGTAAGCCAACGACTAATGGTTCAGGGCAGCTGTATCAATGCTAAGAACAGTGTTTCTAATCTTAATTCTTGCGTTTATAAAAACGGTATCGACGCGTTTAGAAAGATCATTTATGCTGATGGCTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATATGCTCCATCAAATGCAGTTTGGTGGGCTTCTTACTCTGTAGCTCATAGATTCATTTGGAGTGGTCTAAGCTACTACACAAGTAAGAAGGATGAGAGTTGTATAAGTGGCTATGGTTTTAAAGCAGATTCTAAGGCAACAGTGGCAGTTCAAGGGTTGAGTGCAACCTTTGCCAGTGGGGTTTGTGCTATGATAACAATGCCATTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAATGGCCAGAGACGCCCTCTAACGGCGTTGCAGACCGTAAGGAACTTGGTGAAGGAAGGCGGTCTGAATGCTTGTTATAGAGGGCTTGGACCGAGGTGGGCTTCCATGGCTATGTCTGCAACCACCATGATCACAACCTATGAGTTTCTCAAACGGCTATCTGCTAAGAACCAAGATCGTTTGAGCTGA 1047 43.46 MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSSTKLSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMAALEVTKSGVGSATIRLGLSDTTAMAIANAAAGLSSAMAAQLVWTPVDVVSQRLMVQGSCINAKNSVSNLNSCVYKNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWASYSVAHRFIWSGLSYYTSKKDESCISGYGFKADSKATVAVQGLSATFASGVCAMITMPLDTIKTRLQVLDGEENGQRRPLTALQTVRNLVKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSAKNQDRLS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1347418 1348464 + Cp4.1LG06g02420.1 Cpe06g00253 471033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00253 348 SUPERFAMILY Mitochondrial carrier 23 336 IPR023395 -
Cpe06g00253 348 Gene3D Mitochondrial carrier domain 28 347 IPR023395 -
Cpe06g00253 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Cpe06g00253 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 346 - -
Cpe06g00253 348 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 346 - -
Cpe06g00253 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cpe06g00253 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 339 IPR018108 -
Cpe06g00253 348 Pfam Mitochondrial carrier protein 250 343 IPR018108 -
Cpe06g00253 348 Pfam Mitochondrial carrier protein 36 107 IPR018108 -
Cpe06g00253 348 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Cpe06g00253 348 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085
Cpe06g00253 348 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cpe06g00253 348 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00281 Cpe06g00253 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01311 Cpe-Chr3:10613913 Cpe06g00253 Cpe-Chr6:1347418 1.75E-73 dispersed
Cpe06g00253 Cpe-Chr6:1347418 Cpe17g00470 Cpe-Chr17:3502403 8.28E-157 dispersed
Cpe12g00598 Cpe-Chr12:5973612 Cpe06g00253 Cpe-Chr6:1347418 3.57E-153 wgd
Cpe02g00281 Cpe-Chr2:1456039 Cpe06g00253 Cpe-Chr6:1347418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00253 K15121 - csv:101213436 610.142