Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00255 ATGAACAATGTGAGGAAGGAGAACAACCAGCAGAGTAGACCAAACCCATGGGTATCTCAGAACTCATCGGAGGTGAATCTCCAACTTAGAGGAACCTCTCAATCTCGCAGATATTCTCCAAGCTTGTGCGACTGTGTAGGGATGGGATCAAACGTTTCAACCTCTAGACGACCACGCTCGTCTGAGATGCTGGAATTGAAGGTGGCAGAGTTGGAGAGGGAGCTGCTGAAGCAGAAAGAAATCCAGCTCATGTTTAAGAAGAGAATGGATAGAGCACAAGATTCTCTCAAATGCTTTCTTGAGAAAGCCCAGGACCATGGATTCTTGCACCTCATAATTGGGAACAGAGACAATGTGGATGGCGATGGCAGCCCAAATTGCATTCAAAGCGCCGCTTCCAGCCCTGCAGTACCCTCCCCAAGCCACCCGTTTGCAGACCTACAGCCACTCATCGAGCAGGCCAAGCTTCATGGATGGTACATCGAGCCACATGAGATCGAACTGAGGGAGAAGATAGGGCAGGGGACAACAGCTAACATATACAAGGCAACATGGCGGGGTCTTGACGTAGCAGTGAAATGCCTAAACCAAGACTTCTTCTGCTCGAACGAGTGCGGAGTATCTTACTTCGCACAGGAGCTAGAGACACTCTGTCGACAACGCCATCGGTTCGTGCTGCAACTGATGGGGGCATGTCTCCAGCCACCAGGAACCTACGTTTATATGGCACCAGAGGTGATTCGATGCGAGCCTTACACAGAAAAGAGCGATGTTTATAGTTTTGGTATCATATTGAACGAACTTATAATAGGAAAATATCCTTATATTGAGATTGATTATTCTCCCTTCAAGATTGCCATGGAAGTTGGAGAAGGCAAGCTGAGACCGGAGCTTCCAGTGGACGAGAACGGGGATCTAAAAGAGCTGTTAGATCTGATATGTGCATGTTGGAATGGGAATGCTGCTGATAGACCATCTTTTGCAACAATAACGGCTCGTTTGAGAAAAATTCAGAACTAA 1020 47.55 MNNVRKENNQQSRPNPWVSQNSSEVNLQLRGTSQSRRYSPSLCDCVGMGSNVSTSRRPRSSEMLELKVAELERELLKQKEIQLMFKKRMDRAQDSLKCFLEKAQDHGFLHLIIGNRDNVDGDGSPNCIQSAASSPAVPSPSHPFADLQPLIEQAKLHGWYIEPHEIELREKIGQGTTANIYKATWRGLDVAVKCLNQDFFCSNECGVSYFAQELETLCRQRHRFVLQLMGACLQPPGTYVYMAPEVIRCEPYTEKSDVYSFGIILNELIIGKYPYIEIDYSPFKIAMEVGEGKLRPELPVDENGDLKELLDLICACWNGNAADRPSFATITARLRKIQN 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1364022 1366534 + Cp4.1LG06g02490.1 Cpe06g00255 471035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00255 339 Coils Coil 61 81 - -
Cpe06g00255 339 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 36 236 - -
Cpe06g00255 339 ProSiteProfiles Protein kinase domain profile. 40 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00255 339 Pfam Protein tyrosine and serine/threonine kinase 166 236 IPR001245 GO:0004672|GO:0006468
Cpe06g00255 339 Pfam Protein tyrosine and serine/threonine kinase 240 334 IPR001245 GO:0004672|GO:0006468
Cpe06g00255 339 PANTHER OS09G0443600 PROTEIN 237 339 - -
Cpe06g00255 339 MobiDBLite consensus disorder prediction 1 23 - -
Cpe06g00255 339 PANTHER OS09G0443600 PROTEIN 36 236 - -
Cpe06g00255 339 SUPERFAMILY Protein kinase-like (PK-like) 157 336 IPR011009 -
Cpe06g00255 339 Gene3D Phosphorylase Kinase; domain 1 153 237 - -
Cpe06g00255 339 ProSitePatterns Protein kinases ATP-binding region signature. 172 193 IPR017441 GO:0005524
Cpe06g00255 339 Gene3D Transferase(Phosphotransferase) domain 1 238 339 - -
Cpe06g00255 339 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 237 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00255 - - - csv:101216481 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00255 Cpe-Chr6:1364022 Cpe08g01339 Cpe-Chr8:9653010 9.03E-21 dispersed
Cpe06g00255 Cpe-Chr6:1364022 Cpe02g00053 Cpe-Chr2:277513 1.49E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62459 PF07714 PK_Tyr_Ser-Thr 2.50E-15 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00255 Cpe_Chr06 FPKM 9.897927 11.730589 14.711596 14.176905 4.120985 3.175137 3.677572 2.721216 2.665701 2.447116