Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00258 ATGACGAATTGGTGCTGCTTGTGCTTCACCGTTCCAGAAGAAGACGAAAGGGAAGAGGAACTGAAGAAGGAGGGTGAAATGAAACCCATGATGAGTGAGGGGGATTTTGAGAACCAGGATGACTCTGATCGCATTATGCGAAATGGCGATGATTCTGGTGGGAGTAACCCACTTGCGATTGCTGTTGATGGGCCTGACCGCCACGACGGTGATCGGCTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGAGGGCGATGGTGGTGTTCATTGGGACCATGAGCTGCGCGGCGGTGGTGGGGCTGTCAATCCCTGGAACTTTTCTTTTGGAATTCTGCATCAGTCTGAGGGAGGAGAGAGCAGTAGCGCCTCGGCTTTGGCCTTGTCTTCTACGATGGAGACTTCTAATGAGGAACGCGATCGGGATGCCCACCATAAGCGCGCTAAAGTTCACTCCATGTTCATTGAGAGCTCATTTGCAACTTCATGGCCTTTGGGTGCTGGAAATCCTGCGAGAGATTTTGATTTTAGTAATGGATCATCTTCAAATATGACTAGGAACGAATATCTATGCCATGGTACTACATCAAGCAGAGTTGATGCCGACAAAGGCTTGGAATCTAGTTTTGATAGAGATGATGGGATAAATGAGAATGACACCTGTAAATCGGAAGGATTTGAAGTAAGGATGGATCTCACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCACGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTTGAGGATATGTGTGGAAGATATCCAAATGCCACTGAGGTCAATATCTCTGGTGTACCTGCTGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGAAATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGGAGATACCTTTTTTCACGCCCTGGCTGAGTGCCATTTGTTGAAGAGCTTGACTGTCAATGATTCTACGCTAGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATGCGAGTATCTGTTAGATGTCCACAACTTAAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCTCTTCTTCATGACCTAGATATAGGCTCTTGCCACAAGCTCTCAGATGTTGCTATTCGCTCAGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCCAATTGTTCATGTGTTAGTGATGAGACATTACGTGAAATTTCCTCAAACTGCCTGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGATTGACAATGCTGACTGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTAGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCCGTCTCTCTGGATCTTCCTCATTTGCAGAATATCAGACTTGTCCATTGCCGCAAATTCTCTGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTTCTTCAAAAGTTAGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGCTGCCCTATGTTGAGATCGCTTGTTCTTGATAACTGCGAGAGTTTGACTGCTGTTCAATTCTGTAGCAGTTCTTTGGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCCCTTGAACTTCAATGTCCTAATCTTGAACAGGTTTCTCTAGATGGCTGTGATCATCTCGAGAGAGCATCGTTTTCCCCGGTTGGTCTGCGGTCATTAAACTTGGGAATCTGTCCCAAATTGAATGAGTTAAGACTTGAGGCCCCTTGTATGGATTTACTTGAGTTGAAAGGTTGTGGTGGATTGTCTGAGGCGGCCATCAATTGTCCTCGTCTAACATCATTGGATGCTTCCTTTTGTGGGCAACTGAAAGACGAGTGTTTGTCTGCAACGACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGCCCTTCGGTTGGTTCAGAGGGCCTTTACTCTCTACGATGTCTTCTGAAGTTGGTTGTGCTTGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTTGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTATCTGACTCATCGCTAGAGCCTCTGTATAAGGAAGGTGCTCTTCCAGCTCTTCAAGAGTTGGACTTATCTTACGGGACGCTCTGTCAATCTGCCATAGAAGAGCTTCTTGCTTGTTGCACACACTTGACTCATGTGAGCTTAAATGGATGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCTTTGTCCAGCATCCCCATTCCTCTTGGTCAAGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAATCGTTTGTTACAGAATCTTAACTGTGTAGGCTGTCAGAATATTAGGAAGGTTCTCATTCCTCCAGCTGCACGATGTTTTCATTTATCGTCATTAAACCTATCCCTGTCTTCAAATCTCAAGGAAGTCGACGTTTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGTTGCTCTCTGGAAGTTTTGAAACTCGACTGCCCAAAGTTGACCAGTCTCTTTCTTCAGTCTTGCAACATCGAGGAAGAAGCGGTTGTAGCTGCAGTATCTAAATGTAGCATGCTCGAGACGTTGGATGTCCGCTTTTGTCCAAAGATCTCCTCAATTAGCATGGTACAACTGCGTATCGCTTGTGCAAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACATGA 3093 43.97 MTNWCCLCFTVPEEDEREEELKKEGEMKPMMSEGDFENQDDSDRIMRNGDDSGGSNPLAIAVDGPDRHDGDRLRLFEDMVRAMHDEGDGGVHWDHELRGGGGAVNPWNFSFGILHQSEGGESSSASALALSSTMETSNEERDRDAHHKRAKVHSMFIESSFATSWPLGAGNPARDFDFSNGSSSNMTRNEYLCHGTTSSRVDADKGLESSFDRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRNLEVLTLGRGQLGDTFFHALAECHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVMRVSVRCPQLKTLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDVAIRSAAISCPQLESLDMSNCSCVSDETLREISSNCLNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSSLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNFLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLRSLVLDNCESLTAVQFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELRLEAPCMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLSDSSLEPLYKEGALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPKLTSLFLQSCNIEEEAVVAAVSKCSMLETLDVRFCPKISSISMVQLRIACASLKRIFSSLSPT 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1380671 1390164 + Cp4.1LG06g02590.1 Cpe06g00258 471038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00258 1030 SUPERFAMILY F-box domain 233 282 IPR036047 GO:0005515
Cpe06g00258 1030 MobiDBLite consensus disorder prediction 15 65 - -
Cpe06g00258 1030 Gene3D Ribonuclease Inhibitor 400 549 IPR032675 -
Cpe06g00258 1030 Gene3D Ribonuclease Inhibitor 868 1027 IPR032675 -
Cpe06g00258 1030 Gene3D Ribonuclease Inhibitor 550 867 IPR032675 -
Cpe06g00258 1030 MobiDBLite consensus disorder prediction 15 48 - -
Cpe06g00258 1030 Pfam F-box-like 236 275 IPR001810 GO:0005515
Cpe06g00258 1030 PANTHER OS10G0396666 PROTEIN 136 991 IPR044703 GO:0010252|GO:1905393
Cpe06g00258 1030 SMART fbox_2 234 274 IPR001810 GO:0005515
Cpe06g00258 1030 PANTHER OS10G0396666 PROTEIN 136 991 - -
Cpe06g00258 1030 SMART LRR_CC_2 848 879 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 616 654 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 525 550 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 458 478 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 795 820 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 991 1016 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 747 772 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 588 613 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 966 990 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 406 431 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 432 457 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 658 688 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 721 746 IPR006553 -
Cpe06g00258 1030 SMART LRR_CC_2 479 504 IPR006553 -
Cpe06g00258 1030 SUPERFAMILY RNI-like 786 1023 - -
Cpe06g00258 1030 SUPERFAMILY L domain-like 334 697 - -
Cpe06g00258 1030 Gene3D Ribonuclease Inhibitor 271 399 IPR032675 -
Cpe06g00258 1030 Gene3D - 229 270 - -
Cpe06g00258 1030 MobiDBLite consensus disorder prediction 122 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00258 - - - cmo:103493700 1826.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00290 Cpe06g00258 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00258 Cpe-Chr6:1380671 Cpe04g00211 Cpe-Chr4:2255454 4.03E-11 dispersed
Cpe02g00290 Cpe-Chr2:1501554 Cpe06g00258 Cpe-Chr6:1380671 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00258 Cpe_Chr06 FPKM 1.037667 1.030819 0.0 0.27539 1.99535 1.673742 2.510697 0.112516 0.0 0.0