Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00260 ATGGCGGCCGATTTAGCGCGGCTCTCTCTATGGCCTCACCAGAGGCAGTTCTTTCACTCCGTCTCTAAATCTCAGGCTTCTTTGTTCGACTCTAGGCCTGGATTTCTCCCCATACGGCATCGACCTCAGAGTTTAGTACGGAAACAGTATCCACGTCGTTTTGGAAGATGCTTGGGGCATCGTTTCGTTGTTTCGAATACTCTTGATGCCGAACTTCGAGCTCAGAACACGATTCTTCAACAGGAGCGGCGGGATGAGTCTTCTGTTCTTCTTGATGTCTCTGGAATGATGTGTGGTGCATGCGTCTCCCGAGTCAAATCCATTATCTCGTCCGACGACCGAGTTGACTCTGTGGTGGTTAATATGTTGACTGAGACAGCAGCGATTCGGTTGAAATCGGATGAAGTTGGCGCGGAGGTTGGTTCTGCGGTGAATGTGGCGGAGAGTCTGGCGCGAAGACTGACGGATTGTGGCTTTCCGACGGTTTTGAGGAATTCGGAGGTTGGAGTGGCGGAGAATGTGAGAAAATGGAAGGAGATGGTTGAGAAAAAAGGAAAAATGCTGGTTAAGAGTAGGAATCGAGTGGCTATTGCTTGGACTTTGGTTGCCTTATGCTGTGGCTCACACGCATCGCATATCTTGCACACTTTTGGGATTCACATCCACCACGGACCAGTGATGGAGATACTTCATAACTCGTATGCGAAGGGTTGTTTTGCTTTGGTTGCTCTTTTAGGACCAGGACGAGAACTACTCTTTGACGGTCTGAGGGCATTCAGGAAGGGATCACCTAATATGAACTCTCTTGTGGGTTTTGGGGCAGTTGCTGCATTTATTATCAGTGCGGTCTCACTTCTTAATCCTGAGCTAGACTGGGATGCCTCATTTTTTGATGAGCCGGATGGCCCTTTGAGAATTGAAGCTTCTTCTACTGGCTTGAACTCAACAATCTCCAAGATTGTGAGAATGACATTGAAAAGATTACTGCTTAAAACTACTGGGTACTGCTTTGGTACCCATATCTTTCCCGATGTTTTGATGAATGATATTGCTGGACCAGATGGAGACCCCTTGCTTTTGAGCTTGAAACTTTCAGTTGATGTCTTGGTAGTTTCTTGTCCATGTGCACTTGGACTGGCCACTCCCACAGCAATTCTAGTTGGCACCTCCCTTGGGGCTCGACGAGGACTTCTAATAAGAGGAGGAGATGTATTGGAACGCCTGGCAGGCATAGATTGTGTTGCTTTGGACAAGGTTATTGCTTTAGGATATTACAATCCGCACTTTAACTCTCCCTCAGACAACCACGTGAAACTTCTCGCTAAAATTCTCCTAAATTACTTCTTAAAGTTTGAAATGCAAGTTTTCCTAGATCATATAGGCAATATTCTTCACAGTCTCACCAAATTTCTTAACTTTCAGACAGGAACACTTACTGAAGGAAAGCCTACAGTTTCTTCTGTGGTTTCGTTTGTTTATGGAGAAGCAGAAATACTTCAAGTTGCTGCTGCAGTGGAGAAAACTGCTTCACATCCCATTGCAAGAGCTATCATAGATAAAGCAGAATCTTTGAATTTGACCATTCCAGGCACAACAGGGCAGTTGGTAGAACCTGGCTTCGGATCTTTTGCCAATGTAAATGGGCGACTAGTTGCAGTTGGTTCATTAGAATGGGTTAATGATCGATTTGAGCAAAAAGCAAGTACCTCTGATCTCAAGAATCTCGAGCATTCTGTGTTTCAGTCATTAGAGTGGATATCATCTTCAAATAATTCAAAAACAGTTGTTTACGTTGGGCGCGAAGGAGAGGGCATCATTGGTGCTATTGTAATATCTGATCGGTTGCGCTATGATGCTGAATCCACTGTTAATAGGCTCCAGAAGAAGGGAATCAGAACGGTCCTCTTATCTGGAGACAGGGAAGAGGCAGTTGCAAGTGTAGCCAATTCAGTTGGAATAGAAAAGGAATTTGTTCACTCATCTTTGACTCCTCAAAACAAATCTGACCTTATTTCCACTCTGAAAACTGCTGGACATCGAGTTGCTATGGTTGGTGATGGCATAAATGATGCACCATCTTTGGCTTCTTCGGATGTTGGGATCGCTCTGCAGCTTGAAGCACATGAAAATGCTGCTTCGAATGCCGCATCCATTTTACTTCTTGGAAATAGAATATCTCAGCTTGTTGACGCAATGGAACTTGCACAAGCAACAATGTCTAAGGTGTACCAAAATTTGTCGTGGGCAATAGCTTACAATGCCGTTGCCATTCCAATTGCTGCTGGAGTGCTGCTCCCAGGATTTGACTTTGCAATGACTCCTTCCCTTTCAGGTGGTCTTATGGCTTTAAGTTCAATATTCGTGGTCACCAACTCATTACTTCTGCAGATCCATGCCCCCAAAGAACCTCAAAAATCTACCTGA 2424 44.88 MAADLARLSLWPHQRQFFHSVSKSQASLFDSRPGFLPIRHRPQSLVRKQYPRRFGRCLGHRFVVSNTLDAELRAQNTILQQERRDESSVLLDVSGMMCGACVSRVKSIISSDDRVDSVVVNMLTETAAIRLKSDEVGAEVGSAVNVAESLARRLTDCGFPTVLRNSEVGVAENVRKWKEMVEKKGKMLVKSRNRVAIAWTLVALCCGSHASHILHTFGIHIHHGPVMEILHNSYAKGCFALVALLGPGRELLFDGLRAFRKGSPNMNSLVGFGAVAAFIISAVSLLNPELDWDASFFDEPDGPLRIEASSTGLNSTISKIVRMTLKRLLLKTTGYCFGTHIFPDVLMNDIAGPDGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARRGLLIRGGDVLERLAGIDCVALDKVIALGYYNPHFNSPSDNHVKLLAKILLNYFLKFEMQVFLDHIGNILHSLTKFLNFQTGTLTEGKPTVSSVVSFVYGEAEILQVAAAVEKTASHPIARAIIDKAESLNLTIPGTTGQLVEPGFGSFANVNGRLVAVGSLEWVNDRFEQKASTSDLKNLEHSVFQSLEWISSSNNSKTVVYVGREGEGIIGAIVISDRLRYDAESTVNRLQKKGIRTVLLSGDREEAVASVANSVGIEKEFVHSSLTPQNKSDLISTLKTAGHRVAMVGDGINDAPSLASSDVGIALQLEAHENAASNAASILLLGNRISQLVDAMELAQATMSKVYQNLSWAIAYNAVAIPIAAGVLLPGFDFAMTPSLSGGLMALSSIFVVTNSLLLQIHAPKEPQKST 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1392701 1402986 + Cp4.1LG06g02620.1 Cpe06g00260 471040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00260 807 Gene3D - 474 735 IPR023214 -
Cpe06g00260 807 CDD HMA 91 160 IPR006121 GO:0046872
Cpe06g00260 807 ProSiteProfiles Heavy-metal-associated domain profile. 88 163 IPR006121 GO:0046872
Cpe06g00260 807 Pfam Heavy-metal-associated domain 91 136 IPR006121 GO:0046872
Cpe06g00260 807 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 590 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe06g00260 807 PRINTS P-type cation-transporting ATPase superfamily signature 629 639 - -
Cpe06g00260 807 PRINTS P-type cation-transporting ATPase superfamily signature 684 703 - -
Cpe06g00260 807 PRINTS P-type cation-transporting ATPase superfamily signature 471 485 - -
Cpe06g00260 807 Pfam haloacid dehalogenase-like hydrolase 475 697 - -
Cpe06g00260 807 Gene3D - 482 615 IPR023299 GO:0000166
Cpe06g00260 807 SUPERFAMILY HAD-like 475 793 IPR036412 -
Cpe06g00260 807 Gene3D - 81 167 - -
Cpe06g00260 807 PANTHER ATP7, ISOFORM B 73 300 - -
Cpe06g00260 807 PANTHER ATP7, ISOFORM B 474 797 - -
Cpe06g00260 807 PANTHER ATP7, ISOFORM B 301 428 - -
Cpe06g00260 807 SUPERFAMILY HMA, heavy metal-associated domain 87 139 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00260 K17686 copA, ctpA, ATP7; P-type Cu+ transporter [EC:7.2.2.8] - csv:101214637 583.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00260 Cpe-Chr6:1392701 Cpe14g00212 Cpe-Chr14:1185043 2.54E-06 dispersed
Cpe06g00260 Cpe-Chr6:1392701 Cpe19g00213 Cpe-Chr19:1745088 7.56E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g165 Blo01g01443 . Bda01g00641 . . Bpe02g00510 . . . . . . Car09g00315 . . . Cpe06g00260 . . . . . . . Cla05g01629 Cam05g1738 Cec05g1746 Cco05g1803 Clacu05g1729 Cmu05g1614 Cre05g1742 . . Cone17ag0948 . Lsi04g01385 . . . . . . . . . . . . . Cmo09g00365 Cma09g00366 . . Car05g00660 . . Bhi09g03080 . . . . . . . . . . . . . . . . Cme07g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010516 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00260 Cpe_Chr06 FPKM 11.345354 14.400635 3.225848 3.724235 16.336603 10.755134 16.893305 1.26507 1.03844 0.969145