Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00261 TATGGTTTTGTAGCTTTGAGAGAAAATGGATTTACGAAGATGTTCTATAAACGGGTTTTGAAGATTCTTGCTACTACCCAGCCATGGAAGCTGCAGCAATGGGTTAAAACGAAGCCTGGGAAGACGGCAGCCATGGCATTTCCCGTCGAGCTCGTTATTCTGGGTTTTCTCTTCTGTGCTACCATCGGCGCGGTGGACTCCGATGATGATCTTAAGCTATACATGTTTTGTTGTGATGAAGGAGCATCGTTGTTGGACATAAAGAAATCATTCAGGGATGTTGATAATGTTCTATATGATTGGACAAGCTCACCTTCATCAGACTATTGTATATGGAGAGGTGTCACCTGCGACAATGACACTCTCAATGTCATATCTCTTAATCTTTCAGGCCTCAATCTTGATGGGGAAATTTCTCCTTCAGTCGGCAACCTCAAGGGCCTGCAAACCTTGGATTTGAGGGGGAATAGCCTTTCTGGGCAAATCCCAGATGAGATTGGTGACTGTTCTTCATTAACAAATCTGGACTTATCGTTTAATAAAATATATGGAGACATACCCTTTTCCATATCGAAATTGAAGCAGCTGGAAATGCTTGTTCTGAAGAACAATCGACTCATTGGTCCGATCCCATCGACATTATCTCAGATTCCAAACTTGAAGGTTTTAGATCTAGCACAGAACAATCTCAGCGGGGAAATTCCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAATTTGGTGGGCGCGCTGTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACAGGCAGCATACCTCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTAGACCTGTCGTATAATCATCTCACTGGAGAGATACCATTCAACATTGGTTTTCTTCAAGTTGCCACGTTGTCCCTGCAGGGTAATCAGCTATCAGGTCCCATCCCACCGGTAATCGGTCTGATGCAGGCGCTTGCCGTGCTAGATTTGAGCTGCAACATGTTATCTGGTCCAATCCCTTCTATCTTAGGGAATTTGACTTATACTGAGAAACTGTACTTGCATAGCAACAAACTCACCGGGTCCATCCCGGCCGAGCTCGGGAATATGACAAAGCTCCATTATCTGGAACTGAATGATAATCATCTAACTGGGAATATTCCAGCCGAGCTCGGGAAACTCACCGATTTGTTCGATCTAAACGTTGCTAATAACAATCTTGAAGGACCTATCCCTGATAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTTCATGGAAACAAGTTGAATGGAACTATCCCGCCGTCTTTCGAGAGGCTAGAGAGTATGACGTACTTGAATCTCTCCTCTAATGTTCTACGAGGTCCTATTCCAGTCGAGCTATCTCGCATTGGCAATCTCGATACGCTAGACATCTCAAATAACAAAATTAGCAGCACGATTTCTTCATCGTTTGGCGATCTCGAACATCTCCTAAAGCTGAGACTTGAAAACAACAATTTATCGGGGGACGTGACGTCGCTGATTAGCTGCCTAAGCCTTACCGAATTAAACGTATCTTACAACAATCTGGGTGGTGATATTCCCACAAGCAACAACTTTTCTAGGTTCTCGTCTGACAGCAACAACTATCCCTTGACAATATCTAAAGCTGTTATCCTGGGAATTGCTCTTGGTGTCATTGCGATCCTTCTGATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTGATGCTTCACATGAACATGGCACTTCACGTGTATGAGGATATTATGAGGATGACTGAAAATTTGAGTGAAAAGTACATTATTGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTCAAGAACTGCAAACCTGTGGCTATCAAGAAGCTCTACTCTCACCAGCCACATAGCATGAAGGGATTCGAGACCGAACTCCAAACCGTGGGTAGCATCAAGCACAGAAATCTGGTCAGCCTCCAAGGATATTCCTTATCTCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAACGGCAGTCTTTGGGATCATCTGCATTGTAAGATGCCACTTAATAGTTGTTATATTATCTTATCAAAAGCAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCGTTTCAGCTTGCTCTCCTTTGCACCAAGAGGCAGCCATCCGATCGACCGACGATGCACGAAGTAACGCGCGTCATTGAGAGTCTTCTGCCCTCTGCCACAGTGCCAAAACAAACACCAACCATGCCCCCATCTGCAAAATCCCCTTGCTACAGGGACGAGTATACAAATCTAAAAACGCCGCACGTGCTGAACTGCCCATCCATGAGCACGTCAGATGCCCAGCTTTTCCTCAAGTTTGGAGAGGTTATATCACAAAACAGTGAGTAA 2550 44.2 YGFVALRENGFTKMFYKRVLKILATTQPWKLQQWVKTKPGKTAAMAFPVELVILGFLFCATIGAVDSDDDLKLYMFCCDEGASLLDIKKSFRDVDNVLYDWTSSPSSDYCIWRGVTCDNDTLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCSSLTNLDLSFNKIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGALSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLSGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFERLESMTYLNLSSNVLRGPIPVELSRIGNLDTLDISNNKISSTISSSFGDLEHLLKLRLENNNLSGDVTSLISCLSLTELNVSYNNLGGDIPTSNNFSRFSSDSNNYPLTISKAVILGIALGVIAILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVMLHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHQPHSMKGFETELQTVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHCKMPLNSCYIILSKAANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIESLLPSATVPKQTPTMPPSAKSPCYRDEYTNLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1405488 1413091 + Cp4.1LG06g02650.1 Cpe06g00261 471041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00261 849 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 75 512 - -
Cpe06g00261 849 SUPERFAMILY L domain-like 77 313 - -
Cpe06g00261 849 Gene3D Ribonuclease Inhibitor 313 563 IPR032675 -
Cpe06g00261 849 SUPERFAMILY RNI-like 258 546 - -
Cpe06g00261 849 Gene3D Transferase(Phosphotransferase) domain 1 706 800 - -
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 510 722 - -
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 75 512 - -
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 728 836 - -
Cpe06g00261 849 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Cpe06g00261 849 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Cpe06g00261 849 Pfam Leucine rich repeat 482 540 IPR001611 GO:0005515
Cpe06g00261 849 Pfam Protein kinase domain 637 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00261 849 SMART LRR_typ_2 480 503 IPR003591 -
Cpe06g00261 849 SMART LRR_typ_2 384 408 IPR003591 -
Cpe06g00261 849 SMART LRR_typ_2 504 527 IPR003591 -
Cpe06g00261 849 SMART LRR_typ_2 217 241 IPR003591 -
Cpe06g00261 849 SMART LRR_typ_2 265 289 IPR003591 -
Cpe06g00261 849 SMART LRR_typ_2 145 169 IPR003591 -
Cpe06g00261 849 Pfam Leucine rich repeat N-terminal domain 79 118 IPR013210 -
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 510 722 - -
Cpe06g00261 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 728 836 - -
Cpe06g00261 849 SUPERFAMILY Protein kinase-like (PK-like) 606 724 IPR011009 -
Cpe06g00261 849 Gene3D Phosphorylase Kinase; domain 1 603 705 - -
Cpe06g00261 849 Gene3D Ribonuclease Inhibitor 241 312 IPR032675 -
Cpe06g00261 849 ProSiteProfiles Protein kinase domain profile. 634 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00261 849 Gene3D Ribonuclease Inhibitor 78 240 IPR032675 -
Cpe06g00261 849 ProSitePatterns Protein kinases ATP-binding region signature. 640 663 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00261 K20718 ER; LRR receptor-like serine/threonine-protein kinase ERECTA [EC:2.7.11.1] - csv:101214398 1148.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00292 Cpe06g00261 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00261 Cpe-Chr6:1405488 Cpe04g01569 Cpe-Chr4:12287161 6.61E-92 dispersed
Cpe05g00669 Cpe-Chr5:4082738 Cpe06g00261 Cpe-Chr6:1405488 0 transposed
Cpe02g00292 Cpe-Chr2:1515662 Cpe06g00261 Cpe-Chr6:1405488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g166 Blo01g01442 . . . . . . . . . Cma01g01701 . . . . . Cpe06g00261 . . . . . . . . . . . . . . Cone4ag1700 Cone7ag1617 . . Lsi04g01384 . . . . . . . . . . . . . . . . Car01g01317 . . Cpe02g00292 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001314 3 2 3 2 3 1 5 2 2 2 2 1 4 1 0 4 1 0 3 1 2 2 2 1 1 2 2 2 0 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62460 PF00069 Pkinase 1.10E-11 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00261 Cpe_Chr06 FPKM 19.674379 18.032183 16.35861 14.877417 11.640716 12.358496 12.749813 7.149866 7.54371 8.488671