Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00263 ATGCTGTCTCATTTGAGTAGAAATATGGGTTTACTCTGCAGCAGAAGTCGTCACTACAATGAACAAGATTCTGAAGAGAATGCGCAGATAAAGTTGTTGTTCCAAACTGGCTTTGATGAGACAGAGCTAAAGAGCTACATTCCAGTCATTCATGCAAATGTGTATCAGACTATAAAAGTATTACATGACGGTTCGAAGGAGCTCGCTCAAAATGATAAAGAGTTCTCGAAGTATGTTTTATCCAATGAAAATAAGGAGGACGTCCTATATGCAAGAGTTCGTACAACCGGTGTTGTTGAAATTCAATTTAGTCCCGTTGGAGAAAATAAAAAGAGCGGCGAAGTGTATAGACTCTTTGATGTTGGTGGTCAGAGAAACGAGAGGCGAAAATGGATTCATCTTTTTGAAGGCGTTACAGCAGTCATCTTTTGTGCTGCTATTAGTGAGTATGATCAAACACTTTTTGAGGATGAACAGAAGAACCGAATGATGGAGACCAAGGAACTTTTCGAGTGGGTTCTGCGACAAGAGTGTTTTGAGAACACGTCATTTATGCTTTTTCTTAACAAGTTCGATATCTTCGAGAAAAAGGTTCTAAACGTCCCTCTCAGTGTATGTGAATGGTTCAACGATTATCAGCCGGTTTCGACTGGAAAACAAGAGATCGAACATGCCTATGAGTTCGTGAAGAAAAAATTCGAGGAGTTGTACTTTAAGAGCACGGCACCAGATCGAGTAGACCGGGTGTTTAAGGTATACAGAACAACTGCTCTCGATCAGAAACTTGTAAAGAAGACGTTCAAGCTCGTAGATGAAACATTGAGGCGGCGAAATCTGTTCGAGGCTGGGTTATTGTAA 858 40.68 MLSHLSRNMGLLCSRSRHYNEQDSEENAQIKLLFQTGFDETELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFSKYVLSNENKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLRQECFENTSFMLFLNKFDIFEKKVLNVPLSVCEWFNDYQPVSTGKQEIEHAYEFVKKKFEELYFKSTAPDRVDRVFKVYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1419342 1424600 - Cp4.1LG06g02690.1 Cpe06g00263 471043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00263 285 SUPERFAMILY Transducin (alpha subunit), insertion domain 38 84 IPR011025 GO:0007165
Cpe06g00263 285 ProSiteProfiles G-alpha domain profile. 1 285 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 Pfam G-protein alpha subunit 84 273 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 29 85 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe06g00263 285 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 85 285 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe06g00263 285 SMART galpha_1 13 284 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 CDD G-alpha 29 279 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PRINTS Plant G protein alpha subunit signature 48 61 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe06g00263 285 PRINTS Plant G protein alpha subunit signature 63 77 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cpe06g00263 285 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 29 85 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 85 285 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 Gene3D - 80 285 IPR027417 -
Cpe06g00263 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 282 IPR027417 -
Cpe06g00263 285 PRINTS Alpha G protein (transducin) signature 116 133 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PRINTS Alpha G protein (transducin) signature 184 193 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PRINTS Alpha G protein (transducin) signature 81 103 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe06g00263 285 PRINTS Alpha G protein (transducin) signature 138 166 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00263 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - cpap:110809268 484.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00295 Cpe06g00263 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00263 Cpe-Chr6:1419342 Cpe14g00990 Cpe-Chr14:8357647 1.52E-30 dispersed
Cpe02g00295 Cpe-Chr2:1537135 Cpe06g00263 Cpe-Chr6:1419342 7.88E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00263 Cpe_Chr06 FPKM 7.054501 8.085028 8.49017 9.073584 11.559923 12.696882 12.069369 8.068005 7.546584 8.54399