Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00265 ATGGCAGTCGGTGTGAGAGTTGCCGGGAGTATTATCGGCCGCGATCGAGTTCTCACGGCGGTTATTGCCGGAGCGTCCAGTCTTTCGTTCGTGGGATCAGGATTCATAGTGCTGTGTTACGTCCTCTTCAAAGAACTTCGCAAGTTCTCCTACAAGCTTGTCTTCTATCTTGCCCTTTCCGATATGCTTTGCAGTTTCTTCACTATGATTGGGGATCCGGCTACAGGATTTTACTGTTATACTCAGGGCTATAGCACTCATTTCTTTTGTGTGGCATCGTTCTTGTGGACCACAACAATTGCATTCACCCTTCACCGTACTGTTGTTAGACACAAAACCGACGTTGAAGATTTGGAGGCTATGTTTCACTTATATGTATGGGGAACATCGTTAGTGTTGACTGTTATACGTTCAATTGGTAATAACCATGGACATTTGGGTACCTGGTGTTGGGCACAGTCTAGTCGTACTGGAAAGGCTGTTCACTTTATAACATTTTACATGCCACTCTGGGGTGCAATTCTCTACAATGGGTTTACTTACCTTCAAGTGATACGCATGCTTAATAATGCTACCCGTATGGCAGTTGGCATCTCAGATAGGGCTTACCAGTCAGATGCAAGAGCAGACATGAAGGCTTTAAACAGATGGGGATATTATCCGCTCATCCTCATAGGGTCATGGGCTTTTGGTACAATCAACCGCATTCATGATTTTATTGAGCCAGGTCATAAACTCTTCTGGCTGTCAGTTCTTGATGTTGGGATGGCTTCACTAATGGGCTTGTTCAATTCAATAGCATATGGTCTGAATTCTTCTGTACGGCGGGCAATTTATGAAAGATTGGACTTGTTTTGGCCTGAGAAGCTTCGAAGATGGCTCCCCAACAATTCAAGGTTCCGGAACCAAGAACAAGAAGGTGAACTGGTTTCCTTGAGAAGTCTAGATCAGCCATAG 957 44.72 MAVGVRVAGSIIGRDRVLTAVIAGASSLSFVGSGFIVLCYVLFKELRKFSYKLVFYLALSDMLCSFFTMIGDPATGFYCYTQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDVEDLEAMFHLYVWGTSLVLTVIRSIGNNHGHLGTWCWAQSSRTGKAVHFITFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGISDRAYQSDARADMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKLFWLSVLDVGMASLMGLFNSIAYGLNSSVRRAIYERLDLFWPEKLRRWLPNNSRFRNQEQEGELVSLRSLDQP 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1433019 1442076 + Cp4.1LG06g02630.1 Cpe06g00265 471045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00265 318 PRINTS GCR1-cAMP receptor family signature 29 47 IPR022343 -
Cpe06g00265 318 PRINTS GCR1-cAMP receptor family signature 48 63 IPR022343 -
Cpe06g00265 318 PRINTS GCR1-cAMP receptor family signature 79 97 IPR022343 -
Cpe06g00265 318 PRINTS GCR1-cAMP receptor family signature 220 238 IPR022343 -
Cpe06g00265 318 PRINTS GCR1-cAMP receptor family signature 252 271 IPR022343 -
Cpe06g00265 318 PANTHER G PROTEIN-COUPLED RECEPTOR 157-RELATED 15 309 - -
Cpe06g00265 318 SUPERFAMILY Family A G protein-coupled receptor-like 17 291 - -
Cpe06g00265 318 Gene3D - 15 295 - -
Cpe06g00265 318 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 18 272 IPR017981 GO:0004888|GO:0007166|GO:0016021
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 18 33 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 35 49 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 51 73 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 81 94 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 96 114 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 119 134 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 158 170 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 171 194 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 214 235 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 244 261 IPR022340 -
Cpe06g00265 318 PRINTS Putative plant GPCR, GCR1, signature 262 278 IPR022340 -
Cpe06g00265 318 PANTHER TRANSMEMBRANE PROTEIN 116 15 309 - -
Cpe06g00265 318 Pfam Slime mold cyclic AMP receptor 21 272 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00265 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - csv:101216480 625.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00297 Cpe06g00265 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00297 Cpe-Chr2:1553358 Cpe06g00265 Cpe-Chr6:1433019 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00265 Cpe_Chr06 FPKM 2.659887 4.391136 432.073303 426.697723 9.668838 8.316183 7.135627 1.194359 0.615422 1.230612