Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00269 ATGTTTATGGCTGTTCGGATTGCCAATTCTTCGAAGGCCTTGGTCTCGAATGGGTACAATGTGAATTCTTCTCGTCATCTTCCATTTTTTTGCTTGAATGAGTTTGCAAATTATGTATGCAGACATCGTTTTGTGGACTTGTGGTCGTCGTGGTCACAAATCCGGTCGATGACAAGCAGTAAACGCGTTCAAGATAGAAGCCGCTTGAAGAGGGTGCAAGCTCTTGAAATCGCGACGGAAAAATGGAAGGTAGCTTACAAGGTACTCTTCTTGATCGAAACCCTCAAGCAAGAGCCTGAGATGATAATTCCAGTTAGGAATTTAGAGCAATATCGGAGACAAATCAATCTCCCGAAACCGCACAAGATCGCGGACTTCATTCGAAAATCCCCTAAACTGTTTGAACTGTACAAGGATCAGAGGGGCATATTGTGGTGTGGAATGACTAAACAAGCCGAAGATTTGATGGAAGAGGAGGAGACGATAATTGAACAACACGCTGACAAGGCTGCCGAGTATGTTACCAGGTTTTTGATGATGTCAGTGAATAAGCGGCTTCCGGTGGACAAGATTGCTCATTTCAGAAGAGATTTTGGGCTTCCAATTGATTTTCGAGCCAAATGGGTGAATGATTACCCTGAACTATTTAAGTTGGTGAAGTGTGAAGATGAACGTGAATACTTGGAGCTTGTTTCTTGGAATCCTGCCTGGGCTATAACAGAGCTGGAGAAGAAGTTGATGGGTGTGACTGAGAGCACTGCAACTCATACCCCAGGTTTGCTTTCACTTCCTTTTCCCTTGAAATTTCCTTCCAATTACAAGAAGATGTATAGATATGGAGGGAAAATTGATCACTTCCAGAAAAGGTCTTATTTATCTCCATATGCCGATGCAAGGGAGCTAAAAGCTGGCTCACTAGAATTTGATAAAAGGGCTGTTGCTGTTATGCACGAGTTGCTTAACTTCACCATGGAGAAGAGACTAGTTACTGATCACCTTACCCACTTTAGGCGGGAACTTGTGATGCCTCAGAAGCTAATGAGACTTCTTTTGAAGCATGTTGGGATATTCTATGTTTCAGAGAGGGGTAAAAGATTTAGTGTTTTCTTGACAGAAGCTTATGAAGGGCCGGAGTTGATTGATAAATGCCCTTTGGTTCTTTGGAAGGAGAAGGTTTTGAGCCTCGCTGGTTATAGAGGAAAGCGAAAAAGGATTAAAACTTTTGACGACACTTCTGAAATGGAGGACAACAGTTTGGCTTTGGCTGAGTATGACTCTGAGCAGGATATGGAGGATACTGATTGTTCAGAGGAGGCTGCATTAGATGCCAATACAACTGAAATGGAAACTAGGGATCTTGTCAGTGGGTAG 1371 42.96 MFMAVRIANSSKALVSNGYNVNSSRHLPFFCLNEFANYVCRHRFVDLWSSWSQIRSMTSSKRVQDRSRLKRVQALEIATEKWKVAYKVLFLIETLKQEPEMIIPVRNLEQYRRQINLPKPHKIADFIRKSPKLFELYKDQRGILWCGMTKQAEDLMEEEETIIEQHADKAAEYVTRFLMMSVNKRLPVDKIAHFRRDFGLPIDFRAKWVNDYPELFKLVKCEDEREYLELVSWNPAWAITELEKKLMGVTESTATHTPGLLSLPFPLKFPSNYKKMYRYGGKIDHFQKRSYLSPYADARELKAGSLEFDKRAVAVMHELLNFTMEKRLVTDHLTHFRRELVMPQKLMRLLLKHVGIFYVSERGKRFSVFLTEAYEGPELIDKCPLVLWKEKVLSLAGYRGKRKRIKTFDDTSEMEDNSLALAEYDSEQDMEDTDCSEEAALDANTTEMETRDLVSG 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1463732 1465102 + Cp4.1LG06g02640.1 Cpe06g00269 471049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00269 456 Pfam Plant organelle RNA recognition domain 70 398 IPR021099 GO:0003723
Cpe06g00269 456 PANTHER EXPRESSED PROTEIN 46 443 - -
Cpe06g00269 456 MobiDBLite consensus disorder prediction 423 438 - -
Cpe06g00269 456 Coils Coil 149 169 - -
Cpe06g00269 456 MobiDBLite consensus disorder prediction 423 456 - -
Cpe06g00269 456 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 46 443 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00269 - - - csv:101219084 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00269 Cpe-Chr6:1463732 Cpe12g00498 Cpe-Chr12:4885191 2.54E-52 dispersed
Cpe17g01025 Cpe-Chr17:7755060 Cpe06g00269 Cpe-Chr6:1463732 9.01E-39 dispersed
Cpe06g00269 Cpe-Chr6:1463732 Cpe12g00478 Cpe-Chr12:4613225 2.00E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g183 Blo01g01434 . Bda01g00646 . . Bpe02g00517 . Bma01g02187 . . . . Car09g00491 . . . Cpe06g00269 . . . . . . . . . . . . . . . . . . . . Chy04g00252 . . Blo18g00244 . . . . Bma01g00900 . . . Cmo09g00550 Cma09g00559 . . . . . . . . . . . . . . . . . . . . . . Cme04g00282
Vvi4g685 Blo01g01433 . Bda01g00646 . . Bpe02g00517 . . . . . . Car09g00329 . . . Cpe06g00269 . . . . . . . Cla05g01645 Cam05g1756 Cec05g1763 Cco05g1819 Clacu05g1745 Cmu05g1630 Cre05g1759 . . . . Lsi04g01371 . . . . . . . . . . . . . Cmo09g00381 Cma09g00379 . . . . . . . . . . . . . . . . . . . . . . Cme07g00161
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004384 1 3 3 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00269 Cpe_Chr06 FPKM 2.208421 2.684756 0.578687 0.3669 3.293712 2.633072 2.45219 0.654474 0.735087 0.470739