Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00274 ATGGTCTGCGAGATGGAGACTGAGGTTATTGAAGATATGGACATCGAAGCTGTTCCTTCAATGTGGCCTGAGGACGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAAGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTCGCAAAACAGTGGGAGTATAAGCAAGCGAATGCTGTGCGTCTCCTTAGAGAAGAACTTGACATCCTCAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTAGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACAGATTTCGTCATTCAAAGTAAGGGAGTTGAAATTGATGCAGCGTATGATACAGTGACATACTGGAAGCAGCGAGCCATAGATCTGGAAAAACTGTTGGAAGCAAGCCTACAGCGCGAGCAGATGCTTGCAGAGAAGCTCAGGGAAAACATAAGAAATGTTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCGGACAATTTTTTGCATTTTGTGCTGCAGAATGCACCTGTGGTTTTTGGTCATCAGGACAAAGAAATGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTACTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTGCTAGAGAAAGGGCTACCTGCAAAGAGGGAGATTCAGTTTGATACGGAATTATTTGGGCTTAAGACCTTTTTGATTTACGTTGAACCTGTCTTCAGCAAGGCTGGGGAAACAATTGGAATAAATTATGTGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATTGCAGTACAAAAAGCCAAGGAGTCAGAGCTGAACAAAACAATTCACATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGGTCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAGCGACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTCGAGTCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTGAAGCATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTTTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGAAAGGTTGGAATTAACCTTTATGTTCTACCCTATCCACCCATCGGAAAAGGAGAAGAAAGCCCCAAGAAATCAACGGCTGATAACTCAACAGTTCCGGTAAATGGTTGGCAAGAAGGAACATGTCTTCCAACCCCTCAGAATGGCTCGCGTGGCCAGAAACACGGTGACAGAAATCACTTGCATTTTGATGCACCAGGAACCCCTAGTAAAAGTGAAACCACACAGAATGGAAATAGAGAAAACGAATCTTGTTCACCAGAAACGACGGTATGGATACGGTGTGATGTTTTCGACACAGGAATTGGAATACCAGAGAATGCATTACCAACCCTTTTTAAGAAGTACATGCAAGCTAGTGCCGATCATGCTCGCAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACATTTACATTTGTTTTGCCATACAAGGTTTCAACCACCTGCAGTCCTTCCGATGATTCCGATGATCTCTCCGACGACGAGTCCACAAATGACGAAATGACTGAGGGCTTCTTCCAATTCCAACCCCACAGTTTCAGTTCTCTAGCAGCTTCTAATGGCACAAGGATCATCCCAAACTCAATGTTACATACAACTGGGTATCACACCTCAACCAAACTCAATGGATTTTCTGAACCTTCTTTTCCTATTCCCACAAACAACATCACACCACAAGAGACTGCTTCTCTTAGAGATGTCCGTTATGCCAATGCTGCTGCGGTAGCCTCAAGCGAATCACAATGTTCATCGAGTCGGATGAACTCAGATCTTGACAGCGAAAACCAACCACACACTAATGCTCGGTCCCAAAATGTTGGTGTGAATTCAGTTCACAGATCAGAAACAATGAAGCAAGAAAATGGATTGGAAAAGCCAAGTAATAAACTTCTAAAAACAGAACAGGGGAAGGAGAGATCCGATGATGGAAGTAACCATTGCAGAAGTAGCAGTAGCAGTGGTTCTGAACTCACAGTGGGATTGGAACCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTTACTCAATCCATGATGAAGAAGTTCGGCCAAAAAATCCACGTTGTAACTAACGGAATTGAGGCTGTTCGTGCAGTTCAACGCCGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCTGTAAATGCTGGAATCCAGTCAACTACGCCTTATTGGACTCCTTCCTCCCGCAGGATACCCATCGTTGCTATGACGGCAAATTCAATGTCAGAAAGCGCTGATGAGTGTTATGAAAATGGTATGGACTCGTTCGTATCAAAGCCAATCTCCTTCCAGAAGTTGAAAGAATGTCTGGAACGGTATTTACCACAACCTCCCTTGTAA 3006 42.95 MVCEMETEVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPRADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLREELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVIQSKGVEIDAAYDTVTYWKQRAIDLEKLLEASLQREQMLAEKLRENIRNVEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLQEEDIIGRTDVEIFTGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYVGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGKGEESPKKSTADNSTVPVNGWQEGTCLPTPQNGSRGQKHGDRNHLHFDAPGTPSKSETTQNGNRENESCSPETTVWIRCDVFDTGIGIPENALPTLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDDLSDDESTNDEMTEGFFQFQPHSFSSLAASNGTRIIPNSMLHTTGYHTSTKLNGFSEPSFPIPTNNITPQETASLRDVRYANAAAVASSESQCSSSRMNSDLDSENQPHTNARSQNVGVNSVHRSETMKQENGLEKPSNKLLKTEQGKERSDDGSNHCRSSSSSGSELTVGLEPRILLVEDNKTNIMVTQSMMKKFGQKIHVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLQATRLIRSFEETGSWEAAVNAGIQSTTPYWTPSSRRIPIVAMTANSMSESADECYENGMDSFVSKPISFQKLKECLERYLPQPPL 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1503597 1511115 + Cp4.1LG06g02780.1 Cpe06g00274 471054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 522 590 - -
Cpe06g00274 1001 Gene3D - 855 996 - -
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 572 590 - -
Cpe06g00274 1001 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 771 810 - -
Cpe06g00274 1001 SMART HKATPase_4 482 672 IPR003594 -
Cpe06g00274 1001 ProSiteProfiles Response regulatory domain profile. 858 996 IPR001789 GO:0000160
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 771 850 - -
Cpe06g00274 1001 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 997 - -
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 529 556 - -
Cpe06g00274 1001 Coils Coil 181 208 - -
Cpe06g00274 1001 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Cpe06g00274 1001 SMART REC_2 857 992 IPR001789 GO:0000160
Cpe06g00274 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Cpe06g00274 1001 SUPERFAMILY CheY-like 857 997 IPR011006 -
Cpe06g00274 1001 Coils Coil 92 112 - -
Cpe06g00274 1001 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cpe06g00274 1001 Coils Coil 342 362 - -
Cpe06g00274 1001 MobiDBLite consensus disorder prediction 811 839 - -
Cpe06g00274 1001 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Cpe06g00274 1001 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Cpe06g00274 1001 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Cpe06g00274 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Cpe06g00274 1001 Gene3D PAS domain 222 348 - -
Cpe06g00274 1001 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Cpe06g00274 1001 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cpe06g00274 1001 CDD REC_hyHK_CKI1_RcsC-like 859 992 - -
Cpe06g00274 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cpe06g00274 1001 Gene3D - 436 676 IPR036890 -
Cpe06g00274 1001 Pfam Response regulator receiver domain 859 926 IPR001789 GO:0000160
Cpe06g00274 1001 Gene3D - 367 435 - -
Cpe06g00274 1001 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 997 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00274 - - - csv:101219807 1675.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00308 Cpe06g00274 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00274 Cpe-Chr6:1503597 Cpe04g00676 Cpe-Chr4:6801950 2.25E-44 dispersed
Cpe17g01074 Cpe-Chr17:8161488 Cpe06g00274 Cpe-Chr6:1503597 4.01E-10 dispersed
Cpe02g00308 Cpe-Chr2:1621064 Cpe06g00274 Cpe-Chr6:1503597 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49646 PF02518 HATPase_c 8.70E-28 CL0025 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00274 Cpe_Chr06 FPKM 6.311937 7.88009 5.128191 5.706902 6.046514 5.389701 6.07849 6.707122 6.923295 6.615404