Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe06g00276 | ATGGCGTTCCGGTTTGATTTCGGCGGTTCCGCGGGCATTCGAGGAACGCCTTGTTCCTTCCACTTCTGTAACCATAGCTACGAGAACTTGTTTGTTAGGATTGGAGCTGGCTATGTTCAGAGCCTAGACAACATGGGCTATCTGGATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCAGCTGTTAGCGGCGGGGGACTTAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCTCCAGGAAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGACGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTCGACGGTCATGGCGGAGCACGAGCGGCGGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCAGATACCAAATCTGCTATAGCCGATGCATACAACCACACAGACACGGAATTTCTGAAGTTGGAAAATAATCAAAACAAAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGTTTACTTGTTGCAAATGTTGGTGACTCTAGAGCTGTTATTTCCCGGGATGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATCGAGGATGCAGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCACGTGCATTTGGGGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCCGAAATTCAGGAGGAAAAGATTGATAGCTCACTCGAGATTCTTATACTTGCAAGCGATGGACTGTGGGATGTCGTCTCTAACGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGTTACAAGAAGCATATCAGAGAGGCAGTGCCGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTTCCTCAGGGTAA | 1002 | 47.01 | MAFRFDFGGSAGIRGTPCSFHFCNHSYENLFVRIGAGYVQSLDNMGYLDSVLSCSSQIHAAEEAAVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKLENNQNKDAGSTASTAILVGDRLLVANVGDSRAVISRDGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEILILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLLQEAYQRGSADNITCVVVRFLANQGSSSG | 333 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1521860 | 1525527 | - | Cp4.1LG06g02880.1 | Cpe06g00276 | 471056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe06g00276 | 333 | ProSitePatterns | PPM-type phosphatase domain signature. | 109 | 117 | IPR000222 | GO:0043169 | |
| Cpe06g00276 | 333 | SUPERFAMILY | PP2C-like | 72 | 324 | IPR036457 | - | |
| Cpe06g00276 | 333 | CDD | PP2Cc | 77 | 324 | IPR001932 | - | |
| Cpe06g00276 | 333 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 48 | 331 | - | - | |
| Cpe06g00276 | 333 | Pfam | Protein phosphatase 2C | 107 | 317 | IPR001932 | - | |
| Cpe06g00276 | 333 | ProSiteProfiles | PPM-type phosphatase domain profile. | 78 | 324 | IPR001932 | - | |
| Cpe06g00276 | 333 | SMART | PP2C_4 | 68 | 322 | IPR001932 | - | |
| Cpe06g00276 | 333 | SMART | PP2C_SIG_2 | 89 | 324 | IPR001932 | - | |
| Cpe06g00276 | 333 | PANTHER | ALPHABET, ISOFORM E-RELATED | 48 | 331 | - | - | |
| Cpe06g00276 | 333 | Gene3D | - | 69 | 329 | IPR036457 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00310 | Cpe06g00276 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe06g00276 | Cpe-Chr6:1521860 | Cpe09g00038 | Cpe-Chr9:231284 | 5.38E-120 | dispersed | |
| Cpe08g01339 | Cpe-Chr8:9653010 | Cpe06g00276 | Cpe-Chr6:1521860 | 2.47E-44 | dispersed | |
| Cpe02g00310 | Cpe-Chr2:1640017 | Cpe06g00276 | Cpe-Chr6:1521860 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe06g00276 | K17506 | - | csv:101216117 | 550.051 |