Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00279 ATGGCGCCTCTTTCTTCAATGCTTTTCTTTGCCTTTTGTTTCCTTTTCTTTCACTCTTCCGCCGGGAAAGTCTCGCCGGGCGCCCACCGCCTCACCGTCGAACTCGCCGACCTTCTGCCGTCCGCCACTTGCAACCGCCGCTCCGTTCAAGGTCGGAGAACGCAGTCATCACTGGAAGTGATTCACCGGCACGGGCCATGCGGCGGCGGAGAATCGAAAGCACCGACGGCCGCCGAATTATTCGTTCAAGATCAGGGTCGAGTGGATTTCATCCACTCGAAATTCTCAGGGGACTTCAAATCCGTCGATCGTTTACGGCCGTCGAAGGCCACGAAAATCCCGGCGAAGTCCGGCGCCACCATCGGGTCCGGGAATTACATAGTGAACGTGGCTCTGGGGACGCCGAAGAAGTACTTGTCGCTTATATTTGACACCGGCAGCGATCTGACGTGGACTCAGTGCGAGCCGTGTGCCAGATATTGCTACAGCCAGAAGGACCCTGTTTTCGCCCCTTCCCAATCCACCACTTATTCCAACATCACTTGTTCTTCGCCTATCTGCTCTCAGCTTGAATCGGGCACAGGGAACCAACCTGGTTGCTCCACCGCGAAATCCTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAAAGAAACCTTAACCTTAACGCCCACCGATGTTATCAGCAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGCAGCGCCGCTGGTCTTATCGGCCTTGGCCAGGACAAAATCTCCATCGTCAAACAGACCGCCCAAAAGTACGGTCAGATCTTCTCCTACTGCCTCCCTAAAACCTCAAGTTCCACCGGCTACCTTGCCTTCGGCGGCAGTGGCGGTGGCGGCGGTGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTATGGCGTCGACATCGTCGGTATGAAGGTCGGAGGAATTCAGATCCCGATCTCGGCGTCGGTCTTCTCGACCTCCGGCGCGATCATCGATTCCGGCACGGTGATTACGCGGCTGCCGCCAGATGCGTACAGCGCCTTGAAATCGGCGTTTCAGAAAGGAATGACGAAGTATCCGAAGGCGCCGGAGCTTTCGATTCTGGACACGTGTTACGATCTGAGCAAATACACCTCTGTAGAGATCCCGAAAGTGGATTTTCTTTTCAAAGGAGGAACGGTACTCGAACTGGACGGCACCGGAATCTTGTACGGAGCATCGACGACTCAGGTCTGTTTAGCATTCGCCGGAAATATGGATCCGAGCACCGTCGCCATTATTGGGAACGTGCAGCAGAAGACTCTGCAGGTAGTTTACGATGTCGGTGGAGGGAAGATTGGGTTTGGTTATAATGGTTGTTAA 1410 54.26 MAPLSSMLFFAFCFLFFHSSAGKVSPGAHRLTVELADLLPSATCNRRSVQGRRTQSSLEVIHRHGPCGGGESKAPTAAELFVQDQGRVDFIHSKFSGDFKSVDRLRPSKATKIPAKSGATIGSGNYIVNVALGTPKKYLSLIFDTGSDLTWTQCEPCARYCYSQKDPVFAPSQSTTYSNITCSSPICSQLESGTGNQPGCSTAKSCIYGIQYGDQSFSVGYFAKETLTLTPTDVISNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLAFGGSGGGGGALKYTPITKAHGVANFYGVDIVGMKVGGIQIPISASVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMTKYPKAPELSILDTCYDLSKYTSVEIPKVDFLFKGGTVLELDGTGILYGASTTQVCLAFAGNMDPSTVAIIGNVQQKTLQVVYDVGGGKIGFGYNGC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1532462 1536312 - Cp4.1LG06g02820.1 Cpe06g00279 471059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00279 469 Gene3D Acid Proteases 301 469 IPR021109 -
Cpe06g00279 469 ProSiteProfiles Peptidase family A1 domain profile. 126 465 IPR033121 -
Cpe06g00279 469 SUPERFAMILY Acid proteases 120 469 IPR021109 -
Cpe06g00279 469 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 141 152 IPR001969 GO:0004190|GO:0006508
Cpe06g00279 469 CDD cnd41_like 125 469 IPR033873 -
Cpe06g00279 469 Gene3D Acid Proteases 101 295 IPR021109 -
Cpe06g00279 469 PANTHER ASPARTYL PROTEASES 27 469 IPR001461 GO:0004190|GO:0006508
Cpe06g00279 469 Pfam Xylanase inhibitor N-terminal 126 296 IPR032861 -
Cpe06g00279 469 PRINTS Pepsin (A1) aspartic protease family signature 132 152 IPR001461 GO:0004190|GO:0006508
Cpe06g00279 469 PRINTS Pepsin (A1) aspartic protease family signature 345 356 IPR001461 GO:0004190|GO:0006508
Cpe06g00279 469 PRINTS Pepsin (A1) aspartic protease family signature 441 456 IPR001461 GO:0004190|GO:0006508
Cpe06g00279 469 PANTHER ASPARTYL PROTEASE AED1 27 469 - -
Cpe06g00279 469 Pfam Xylanase inhibitor C-terminal 319 464 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00279 - - - csv:101215397 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00279 Cpe-Chr6:1532462 Cpe09g00492 Cpe-Chr9:3252631 4.33E-68 dispersed
Cpe12g00786 Cpe-Chr12:7100211 Cpe06g00279 Cpe-Chr6:1532462 1.33E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00279 Cpe_Chr06 FPKM 24.524845 31.128519 9.305623 9.944164 11.9273 9.481708 8.091797 2.570922 1.610597 2.189613