Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00288 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGCGGAAGCAGATTTGTTACCCCTCGCTTCGATTCCTCCTCCGCTGATTCTTCGTCGCTTCGTCCACATGGCGGTGTTGCTTCAATCCTCAAGGCCGGTGATCTACGGTTTGAAGGTCGTGAGCGAATCCAGTACACTCGAGACCAGCTTCTGCAACTTAGGGAGGTTGCAACGGTCTCTGAGGATATCTTGAAGATCAAACTAGAAGTTGAGACTGAGATACTTGGGGAGGATCAAACATGGGCTCGTGCTGAAAGCAATCAGCAACCACAATCTCAAGGCCGTTACTTTGAGCCGGACAGTCGAGATTGGCGTGGTCGATCAGGACAGTTACCCACCACAGAGGAAGGATCTTGGGAGGCAATTCGCGACAACAAGGACTTGACAGGACAATCTTTGCAAGACTCAAATAATAGGACTCAAGTTTCTGGTAACCAAGGGGTGGGTACTGCAGCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGAAAAGGATCGTGTTTTGAAGACAATTAAAGGTATACTCAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAAGGTCAATTGATTGACTCTGGAATTACATCTGCTGATATTTTGAAGGATGTTATTTCACTTATATTTGAGAAGGCCGTGTATGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCCGACCTTAATGAGAAGCTTCCTTCATTTACATCTGATGTGCCTGGGGAGAAAGATATCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAAGCGTTTGAAGGTGCTGATAACCTGAGGGCAGAAATCAGGCAGATGACTAATCCTGATCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGATTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCCAAAATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCATTTTTTTAACACGATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATTTGTATTTCAGCCGATTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTACCTAGACGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCTGAGGCTGAAAAGAATTTAGGGCTTCGTCCAGGTTCGACTGCAATGATGAGAAATGGCCGTAATGCTGAGGCACTTGGGGGTCCTGGTGGTTTTCCTGTTGCTGGACCTGGGTTTGGGGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGATTCAGACAATTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGAAAGCGGAGGTCATACTCAGGCTTCTTCGCGTGTCCAGTCATCACTAATTGGCAAAACACCTTCCATTAATTCTAAATATTTACCTCAGGGAAGTGGTGGTGTTATAACTGGGAAAACAAGTGCTTTGCTACAGGGTAGCGCTGCTGCATCTCCTGCCCGACCAAGTTTCGTGCCTGGAACACAGCCTGTCGTCCACAACCCTAAACCAGTTGCTCCAGTTGCATCAGTCATACCTTCTCCTCAGAAGCCTACAGCTCCTTCTGTAGTATCCAATTCTGCTGATCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTCAGCGTACGGATTCTTGCTGAAGCTCTACAGTGTGTAGAGGAGCTGAAAGCCCCAGCTTATCACCCAGAGGTTGTTAAAGAATCCCTTATCATAGCACTTGAAAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCACAAGAATGTCTTTACTGCAAAGGATATTGGTACGGGGTGCCTTCTATATGGGTCATTGATGGATGATATCGGCATCGATCTACCGAAGGCACCGAACAATTTCGGTGAGATTCTCGGGAAGCTAATATTGATCGGGGGCCTGGATTTTGCGGTCGTGAAGGAGATTCTTAAGAAGATGGAAGATAACTACTTCCAGAAATCCATTTTTGGTGGTGCTATGAAGAGCCTCAACTCTAGCCCTTCTGGAGAGGGAATTCTGGCAACTCAAAGTGCTGAGATCCAGGCATGTGAAACTTTACTTGCATGA 2313 46.0 MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILKAGDLRFEGRERIQYTRDQLLQLREVATVSEDILKIKLEVETEILGEDQTWARAESNQQPQSQGRYFEPDSRDWRGRSGQLPTTEEGSWEAIRDNKDLTGQSLQDSNNRTQVSGNQGVGTAAALIKAEVPWSVRRGNISEKDRVLKTIKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFEKAVYEPTFCPMYALLCSDLNEKLPSFTSDVPGEKDITFKRVLLNICQEAFEGADNLRAEIRQMTNPDQEMERRDKERMIKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISHFFNTIGKQLDESPKSRRVNDLYFSRLKELTANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAMMRNGRNAEALGGPGGFPVAGPGFGGMMPGMPGTRKMPGMPGLDSDNWEVPRSRSMPRGESGGHTQASSRVQSSLIGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPSFVPGTQPVVHNPKPVAPVASVIPSPQKPTAPSVVSNSADLHKKTVSLLEEYFSVRILAEALQCVEELKAPAYHPEVVKESLIIALEKIPPCVDPVVKLLEHLLHKNVFTAKDIGTGCLLYGSLMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEILKKMEDNYFQKSIFGGAMKSLNSSPSGEGILATQSAEIQACETLLA 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1578984 1584725 + Cp4.1LG06g02750.1 Cpe06g00288 471068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00288 770 SMART ma3_7 605 717 IPR003891 -
Cpe06g00288 770 Pfam MIF4G domain 194 418 IPR003890 GO:0003723|GO:0005515
Cpe06g00288 770 MobiDBLite consensus disorder prediction 25 39 - -
Cpe06g00288 770 SUPERFAMILY ARM repeat 602 756 IPR016024 -
Cpe06g00288 770 SMART if4_15 193 418 IPR003890 GO:0003723|GO:0005515
Cpe06g00288 770 MobiDBLite consensus disorder prediction 499 523 - -
Cpe06g00288 770 MobiDBLite consensus disorder prediction 100 114 - -
Cpe06g00288 770 MobiDBLite consensus disorder prediction 1 43 - -
Cpe06g00288 770 MobiDBLite consensus disorder prediction 100 134 - -
Cpe06g00288 770 Pfam MA3 domain 606 716 IPR003891 -
Cpe06g00288 770 Gene3D - 184 419 - -
Cpe06g00288 770 Gene3D - 600 760 - -
Cpe06g00288 770 MobiDBLite consensus disorder prediction 509 523 - -
Cpe06g00288 770 SUPERFAMILY ARM repeat 186 421 IPR016024 -
Cpe06g00288 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 769 IPR045208 GO:0003743
Cpe06g00288 770 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 769 - -
Cpe06g00288 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00316 Cpe06g00288 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00288 Cpe-Chr6:1578984 Cpe18g00574 Cpe-Chr18:6203733 0 dispersed
Cpe02g00316 Cpe-Chr2:1669715 Cpe06g00288 Cpe-Chr6:1578984 0 wgd
Cpe04g01260 Cpe-Chr4:10480316 Cpe06g00288 Cpe-Chr6:1578984 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00288 K03260 - csv:101211356 1247.26