Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00295 ATGCCAGAAGCCATGGCGGATGTTAGCTCTAATCCAATTTCGGCTTCGGATACATTGACGCTTGACGGAATAAGAGACTCTTTGATCAGACAGGAGAATTCTATTGTTTATAGTCTCATCGAGAGAGCTCGGTTCCCTCTCAATCGGCAGATATACCTTCAGAATAATGCTTCAATTCCTGGATTCTCTGGTTCTTTGGTCGAGTTCATTGTGAGAGAAACTGAGGCCATTCAAGCCAAGGCTGGTAGATATGAGAATCCTGAAGAAAATCCGTTCTTCCCTGAGAGCTTGCCTCGTCCATTGGTGAACCCTCACAAGTATCCAAAGGATTTGCATCCTTCAGGCGCTTCAATTAATATGAACAAAGCCATATGGGAATTCTACTTCGACAAATTCTTACCATTGTTGGTTGCCGATGGAGACGATGGAAACTACGCAGCCACTGCTGCTAGTGATCTTGCTTGTTTGCAGGAAAGAGATACTTTGACGAAGCTATTAACATTTGTAGCAGTGGAAGAGATGGTGAAGAAGAGAGTAGAGAAGAAGGCTATGGTGTTTGGGCAAGAAGTTACCCTCAACAACACAAACGAAGGAGGAAAGCATACGATTGATCCATCGCTCGCATCTCGCCTTTACAGCGAATGGGTAATTCCCCTCACGAAGGAAGTCGAAGTCGAGTACCTTCTATGTCGCCTCGAATGA 702 44.87 MPEAMADVSSNPISASDTLTLDGIRDSLIRQENSIVYSLIERARFPLNRQIYLQNNASIPGFSGSLVEFIVRETEAIQAKAGRYENPEENPFFPESLPRPLVNPHKYPKDLHPSGASINMNKAIWEFYFDKFLPLLVADGDDGNYAATAASDLACLQERDTLTKLLTFVAVEEMVKKRVEKKAMVFGQEVTLNNTNEGGKHTIDPSLASRLYSEWVIPLTKEVEVEYLLCRLE 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1614531 1617631 - Cp4.1LG06g03030.1 Cpe06g00295 471075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00295 233 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 13 157 IPR037039 GO:0004106|GO:0009073
Cpe06g00295 233 SUPERFAMILY Chorismate mutase II 13 233 IPR036263 GO:0046417
Cpe06g00295 233 PANTHER CHORISMATE MUTASE 157 233 IPR008238 GO:0004106|GO:0009073
Cpe06g00295 233 PANTHER CHORISMATE MUTASE 9 157 IPR008238 GO:0004106|GO:0009073
Cpe06g00295 233 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 158 233 IPR037039 GO:0004106|GO:0009073
Cpe06g00295 233 ProSiteProfiles Chorismate mutase domain profile. 12 233 IPR008238 GO:0004106|GO:0009073
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00295 K01850 E5.4.99.5; chorismate mutase [EC:5.4.99.5] - csv:101213051 357.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00324 Cpe06g00295 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00181 Cpe-Chr4:1839667 Cpe06g00295 Cpe-Chr6:1614531 1.41E-58 dispersed
Cpe06g00295 Cpe-Chr6:1614531 Cpe13g00970 Cpe-Chr13:8086024 9.13E-69 dispersed
Cpe02g00324 Cpe-Chr2:1714641 Cpe06g00295 Cpe-Chr6:1614531 1.15E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g575 Blo01g01418 . Bda01g00662 . . Bpe02g00535 . . . . Cma01g01666 . Car09g00360 . . . Cpe06g00295 . . . . . . . Cla05g01680 Cam05g1795 Cec05g1804 Cco05g1862 Clacu05g1782 Cmu05g1667 Cre05g1797 Cone4ag1747 Cone7ag1666 . . Lsi04g01337 . . . . . . . . . . . Sed05g1745 Cmo01g01715 Cmo09g00415 Cma09g00410 . Car01g01280 . . Cpe02g00324 Bhi09g03009 Tan01g3563 Cmetu07g2151 . . . . . . . . . . . . . . Cme07g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008493 1 2 0 0 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00295 Cpe_Chr06 FPKM 6.800905 6.103616 13.787222 12.983982 64.706093 66.096809 65.490036 17.101254 17.750139 14.174622