Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00296 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAAACCTACCCGCAACAGGCCGGTACCATCCGGAAGAACGGTTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGCCATGCGAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGCAACACCAAGGATGACTTAAGGCTCCCAACTGATGACAGCCTGCTCTCTCAGATTAAGGATGGTTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 483 48.24 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1618331 1621142 - Cp4.1LG06g03020.1 Cpe06g00296 471076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00296 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe06g00296 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cpe06g00296 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cpe06g00296 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cpe06g00296 160 Gene3D - 86 159 IPR012340 -
Cpe06g00296 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe06g00296 160 CDD S1_eIF5A 86 156 - -
Cpe06g00296 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe06g00296 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cpe06g00296 160 MobiDBLite consensus disorder prediction 1 21 - -
Cpe06g00296 160 Gene3D - 1 85 IPR014722 -
Cpe06g00296 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cpe06g00296 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00296 Cpe11g00295 CCT
Cpe02g00325 Cpe06g00296 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00296 Cpe-Chr6:1618331 Cpe09g00204 Cpe-Chr9:1182506 1.05E-111 dispersed
Cpe11g00295 Cpe-Chr11:1604386 Cpe06g00296 Cpe-Chr6:1618331 4.83E-110 wgd
Cpe18g00566 Cpe-Chr18:6172488 Cpe06g00296 Cpe-Chr6:1618331 3.37E-25 wgd
Cpe02g00325 Cpe-Chr2:1719557 Cpe06g00296 Cpe-Chr6:1618331 4.25E-93 wgd
Cpe04g01252 Cpe-Chr4:10444010 Cpe06g00296 Cpe-Chr6:1618331 1.79E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00296 K03263 K02180 egr:104436092 322.013