Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe06g00297 | GCGCGGTTTTGTGCTCATTTGGATCTTAACCACAATATCACAATGGCCCTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTGTTAGAGATATCCGAAAGGGTTTATGTTTTCGATAGCTGCTTTACGACGGAGGTATTGGAAGAGGATGAATACAAGGTCTATATTGGAGGCATTGTAGGAAAGCTTCGTGAGAGTCTCACCGACGCTTCGTTCATGGTGTTTAATTTTCGAGAAGGGGAGGGTCATAGCCTCATTACAAGTATATTATCTGTATATGACATGACCGTCATGGATTATCCGAGACAATATGAAGGCTGCCCTCTACTCACCATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAGCAAAATGTACTTTTGATGCATTGTGAAAGAGGGGGGTGGCCTGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAATACGCAGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCGCCTCGGGAGCTTTTGCAGTTGATGTCACCTCTTAACCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCACAATGGCCTCCGCTCGACAGGGCGCTCACTCTAGACTGCATTATTATTAGATTGATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTCAGGATATATGGACAGGATCCCTTTTTGGTGGCGGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTTTAAGCAGGTAGATTGTGAACTACTTAAAATTGATATCCATTGCCATATACAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGTAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTGATACTTAACCGTGACGACATTGATATCGTATGGCATGCAAACGATCAATTTCCAAAGGATTTCAGAGCAGAGATTCTTTTCTCAGAGATGGATGCTTCCGCACCACTTGTTTCAATTGAATTGCCAAATATTGAGGAGAAAGATGGCCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCACTGAGGACTGGCTAAGCCCAAAGGCTAATGCAGCTCTTAATATGCTCCAGAAAATAACAGCTACGAATTTTCTTACAGAGAAACTGGCTAGTTCCAGCCCTTTAGAGAGAACCGAGATGCTCGACTTATCTCTTGATAAACTAGCTATGGAATCAGAGACAACGGAAGACGATGTTACAAGTCCCCGATCGAAGATGCATACAAATCAATATCAGCCTTCTTTTGAACTATCCCACGCTGCAAGTTCAGCGAGATCAAAGATTGAACCCCCAGAATTGCAGGTTGCTCTCCAACTACCAGTTCAGTCTAAAATCATCACCCAACGAGTACCTGAACCTCCATTGTCGACGCCAGACTCCTTCCCTAGTTCTGTGCAAGGTTCACCTCGCGCAATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCCACATTTAGTGGTAAAGAAGTCCTACAACCAACAATGTCTTCACCTTCATCTGGTCTGTTGAGTATGCGTGCTCTAGACTCCCTGAAAGATATTCAACCTAGTAAGCTTCCTATTTTGCCAACTTCAACCATTACTGATCCGTTGACACTTCACCAACGTTCCTTGAAACCTCTAAAATTTTCACATCCTCAACCTCCTCCAACCGCTCCACGGGGGAGAAGTCAATTGTCACCTTCTTCATCTCAACCAACACCTACCTCTTTTCGTCGGGAGTCCCCACCCTCTTTCAATGAGAGTGAACCTTCAAGATCCTCTTCTAAGGAATCATTTTCTGTTCCCATTCATCCCTCACCTTCGGCTTTAGTAACATCTCTATGTACTAGTAGAACGAATGGTTCATTTTCCCCATCCGCACCACAACCTCCTTCTACGACAGTACTGTTATCCTCTACGAAGAACTTGACGAGTGCCTCTACCCTTCCCTTCCCTCCTCCTCCTCCTCCATGTTGTACCCCTAACTTGGGTGCTAGTGTTGTCTCGCCAACATCAGTGCCCCGACCCCCACCTCCACCTCCTTCATTGAAGGACTCTATAATCACAGTCATGCATGATCCCCGATCTCCACCTCTCGCCCCACCCTTGCCTCCATCTTTTTTGAGTTCAACACCTACTTGTGATTCTACTATCACACCTCCTCCTAGTCTTGCACCACAAGATTCTGGCACGGTAGTTAGGAACTCAACGGTTGTACCTAGCGCTCCACCTCCCCCACCTCTCCCATCTCATTCTTCTTCAAGTCCTAGTACTCTATCTTCAGTGCCACCCCCGCCACCCCCTCCTAGTCTTGCACCAAATGTCTCTGCCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGATCCACCTTATGTTCAGGTGCTGTAACGTCAGCTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAAGGAGTCTGCAACACTTGCTCCACCTGCACCCCCTCCCCCAGGTTTCAACGGTAATAAACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCACTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGGTCTATTCAGTGCAAAGGCACGATGCATTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTATCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTGTGGGCAGAGACACAAAAAAGTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAAAATCTGGAGGTTTGGGTGGAAATTCAAATCGCCCAGCCTCAGGGCCGAAATCAGAGAAAGTTCAATTGATTGAACTTCGACGGGCATATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCCGATATGATGTGTTCAGTACTTGCATTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAGTGGGGATAAGGAGAACTTGGGAAAATGTGAACAGTTCTTTTTAGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCATTTGCAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAACGCTTTGAACCACGGGACGGCTAGAGGTTCGGCGATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCGAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGCTTCTACAAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTGGAGAAGGTCGTTCAGGAATTGGCTAATTCCGAGAACGACGGGCACGTTTCAGAAAATTTTTGTCAGACTTTAAAAAACTTCCTTTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTTTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTCGCTCTTTATTTCGGCGAAGATCCAGCACGTTGCCCTTTCGAGCAAGTTGTTTCTACATTGTTCAATTTCGTGCGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGATAAGTTAAAGGTCAGTACCCCGAAAAAGGAGTCACGATTCTTCATGCAGACACCAACCTAG | 3987 | 44.67 | ARFCAHLDLNHNITMALFRKFFYRKPPDGLLEISERVYVFDSCFTTEVLEEDEYKVYIGGIVGKLRESLTDASFMVFNFREGEGHSLITSILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSQWPPLDRALTLDCIIIRLIPNMDGEGGCRPIFRIYGQDPFLVADRTSKVLFSTPKKSKLVRQFKQVDCELLKIDIHCHIQGDVVLECISLDNDLVREEMMFRVMFNTAFIRSNILILNRDDIDIVWHANDQFPKDFRAEILFSEMDASAPLVSIELPNIEEKDGLPIEAFARVQEIFSTEDWLSPKANAALNMLQKITATNFLTEKLASSSPLERTEMLDLSLDKLAMESETTEDDVTSPRSKMHTNQYQPSFELSHAASSARSKIEPPELQVALQLPVQSKIITQRVPEPPLSTPDSFPSSVQGSPRAILRYHSAPSALGITALLHDHSTFSGKEVLQPTMSSPSSGLLSMRALDSLKDIQPSKLPILPTSTITDPLTLHQRSLKPLKFSHPQPPPTAPRGRSQLSPSSSQPTPTSFRRESPPSFNESEPSRSSSKESFSVPIHPSPSALVTSLCTSRTNGSFSPSAPQPPSTTVLLSSTKNLTSASTLPFPPPPPPCCTPNLGASVVSPTSVPRPPPPPPSLKDSIITVMHDPRSPPLAPPLPPSFLSSTPTCDSTITPPPSLAPQDSGTVVRNSTVVPSAPPPPPLPSHSSSSPSTLSSVPPPPPPPSLAPNVSAPPPPPPPPFANSGSTLCSGAVTSAPPAPPPPGFSMKESATLAPPAPPPPGFNGNKLSNVNGTSSQSHVGTNNSNIPSIPGPPSSGLFSAKARCIGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKSDEASKAPEFDMSELESLFSAAAPNSKSGGLGGNSNRPASGPKSEKVQLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDESALDVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEQFFLELMKVPRVESKLRVFSFKIQFHLQIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGHVSENFCQTLKNFLSHAEAEVRSLAFLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKDKLKVSTPKKESRFFMQTPT | 1328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1626314 | 1634592 | + | Cp4.1LG06g02930.1 | Cpe06g00297 | 471077 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe06g00297 | 1328 | PANTHER | FORMIN-J | 15 | 754 | - | - | |
| Cpe06g00297 | 1328 | PANTHER | FORMIN-J | 765 | 1319 | - | - | |
| Cpe06g00297 | 1328 | Gene3D | - | 210 | 355 | - | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 665 | 684 | - | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 610 | 652 | - | - | |
| Cpe06g00297 | 1328 | Gene3D | Protein tyrosine phosphatase superfamily | 6 | 205 | IPR029021 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 1303 | 1328 | - | - | |
| Cpe06g00297 | 1328 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 28 | 201 | IPR029021 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 878 | 906 | - | - | |
| Cpe06g00297 | 1328 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 851 | 1303 | - | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 980 | 999 | - | - | |
| Cpe06g00297 | 1328 | SMART | it6_source | 924 | 1323 | IPR015425 | - | |
| Cpe06g00297 | 1328 | Pfam | Formin Homology 2 Domain | 927 | 1283 | IPR015425 | - | |
| Cpe06g00297 | 1328 | SMART | PTEN_C2_2 | 211 | 351 | IPR014020 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 1303 | 1317 | - | - | |
| Cpe06g00297 | 1328 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 215 | 352 | IPR035892 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 757 | 786 | - | - | |
| Cpe06g00297 | 1328 | Coils | Coil | 1284 | 1304 | - | - | |
| Cpe06g00297 | 1328 | Pfam | C2 domain of PTEN tumour-suppressor protein | 214 | 351 | IPR014020 | - | |
| Cpe06g00297 | 1328 | ProSiteProfiles | C2 tensin-type domain profile. | 213 | 352 | IPR014020 | - | |
| Cpe06g00297 | 1328 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 925 | 1309 | IPR015425 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 807 | 836 | - | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 980 | 1001 | - | - | |
| Cpe06g00297 | 1328 | Gene3D | Formin, FH2 domain | 944 | 1321 | IPR042201 | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 594 | 652 | - | - | |
| Cpe06g00297 | 1328 | MobiDBLite | consensus disorder prediction | 694 | 912 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00327 | Cpe06g00297 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00296 | Cpe-Chr4:3737062 | Cpe06g00297 | Cpe-Chr6:1626314 | 1.20E-06 | dispersed | |
| Cpe04g01480 | Cpe-Chr4:11754724 | Cpe06g00297 | Cpe-Chr6:1626314 | 4.34E-156 | dispersed | |
| Cpe05g00142 | Cpe-Chr5:727391 | Cpe06g00297 | Cpe-Chr6:1626314 | 5.77E-160 | dispersed | |
| Cpe06g00297 | Cpe-Chr6:1626314 | Cpe18g00780 | Cpe-Chr18:7393833 | 1.82E-171 | dispersed | |
| Cpe18g00562 | Cpe-Chr18:6145810 | Cpe06g00297 | Cpe-Chr6:1626314 | 0 | wgd | |
| Cpe02g00327 | Cpe-Chr2:1729095 | Cpe06g00297 | Cpe-Chr6:1626314 | 0 | wgd | |
| Cpe04g01248 | Cpe-Chr4:10415693 | Cpe06g00297 | Cpe-Chr6:1626314 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe06g00297 | - | - | csv:101214019 | 1817.74 |