Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00299 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCTAAGGTCTATTATGGAAAAGAATTGGAGTCTGGAGATAGTGTAGCGATTAAGGTTTTAAACAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCAAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAGCTTTTTGCCAAAGTTGCAAGAGGAAGACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGTGCCGTCGATTACTGTCATAGTCGTGGAGTTTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTCTACCTGAACAGCTTCGGAACGATGGTCTTCTCCACACGCAGTGCGGGACTCCGGCCTACGTCGCACCGGAAGTACTAAGAAGAAAGGGCTACGATGGAGCCAAAGCCGATATCTGGTCTTGCGGCGTGATTTTGTATGTTTTGTTAGCAGGATTTCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAAGCCGAATTCGAATGTCCGCCATGGTTCTCCGCTGAAGCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGAAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGCAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAATTAGTCACAGCGAAAACAGAGGATTCCGATTCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAGTTCATATCGACGATGTCATCGGGATTCGATCTATCGAGCTTATTCGAAAACAAAAGGAAGACGGGATCCATATTCACATCGAGATGCTCAGTGTCGACGATCATGGAGAAAATCGAGACGGTGGCGAAGAGACTGAGCTTCAAGGTCTCGGAAGTGAAAGACTTCAAGCTCCGGCTGCAAGGTCCAGGGGAGGGGCGAAAAGGAAAGCTATCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCCATAGTGGAATTTTCAAAGTCGGCCGGGGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTTCGGCCGGCGTTGAAGGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCTACCGGTGACGGACGTCACGGCCAACTTAACGGCGACGGCTTTTTGTGA 1332 47.82 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGDSVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGRLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAEAKRLISKILVVDPERRITIGAITRVPWFRKDFSRSLSFTMKELVTAKTEDSDSESPKLSTPKFFNAFEFISTMSSGFDLSSLFENKRKTGSIFTSRCSVSTIMEKIETVAKRLSFKVSEVKDFKLRLQGPGEGRKGKLSVTAEVFEIAPEVAIVEFSKSAGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPTGDGRHGQLNGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1642721 1644052 - Cp4.1LG06g02970.1 Cpe06g00299 471079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00299 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Cpe06g00299 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cpe06g00299 443 PANTHER - 1 430 - -
Cpe06g00299 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cpe06g00299 443 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Cpe06g00299 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Cpe06g00299 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00299 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cpe06g00299 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00299 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cpe06g00299 443 CDD CIPK_C 302 416 - -
Cpe06g00299 443 CDD STKc_SnRK3 10 264 - -
Cpe06g00299 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
Cpe06g00299 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00299 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00299 Cpe-Chr6:1642721 Cpe20g00467 Cpe-Chr20:2703149 3.06E-178 dispersed
Cpe12g00033 Cpe-Chr12:164634 Cpe06g00299 Cpe-Chr6:1642721 1.29E-73 dispersed
Cpe03g00911 Cpe-Chr3:5862134 Cpe06g00299 Cpe-Chr6:1642721 0 transposed
Cpe18g00559 Cpe-Chr18:6124703 Cpe06g00299 Cpe-Chr6:1642721 1.13E-166 wgd
Cpe02g00329 Cpe-Chr2:1747908 Cpe06g00299 Cpe-Chr6:1642721 0 wgd
Cpe04g01247 Cpe-Chr4:10411161 Cpe06g00299 Cpe-Chr6:1642721 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62462 PF00069 Pkinase 3.50E-75 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00299 - - csv:101213773 828.55