Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00305 ATGACGGTTGAGCCTAGAATCGATGATCCAAATGACCAATTTCCGATTGGAATGCGTGTTCTCGCCGTTGACGATGATCCTACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTGACTACAACTAATCAGGCTATTATGGCACTCAAGTTACTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGACCTGCCTGTTATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCGTGCGATTACTTGTTGAAACCTGTTCGCATCGAGGAGCTAAGGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTCGATCCGAAGGACCGAATGAATTCTGGCAATCAGGACAAGGTTGATTCTGAGAATGGTGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGATGATGATGACCAGGACTATAATGAGCAAGAGAATGACGACGCGTCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTCAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGATTTGATGAACGTCGAAAAGCTCACAAGAGAAAACGTAGCTAGTCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGGAGATCCTTCTTATTTGAGAATCGGTTCTCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCGCAGTTTCCGAACACTGCTTATAGATCCATCCCAACGACTGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGATTAGCTAATGATCCCATGATTTCAGAAGTTCAGCATCATGAAGTGAATGTTGGCAGAAAATTTGGATCTCAATCTTCGATTTCGGTACTATCTTCAACTTCCGAAAGCTCACGTCCTTCGCTCGATAATCTTAGATGCACTGGTGAGAATTGGCCGAAAGCTGTTCATTCATCTCGGGTCCACTTGAATACAATTCCATCTAGCAACCTCTCGAATATTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGACATTTCGTCTATTACTTCAATATCTACTCCGTCCCATGATTCGAGAACCGATTCTCAACGACAAGGAGCCACAACTAGCAACAGATATAATCAAATGATCTCGAAGGTTCCTATTCAAGATTGGAATGATCATAAACAGGATGCCTATTGCCACACAACTATGGCCCGTAGTTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCATTTGGAAAATCAGAACACCTTCTCTGGTAGCAAGGATTTCAATGTGACTAATCAAGCAATCGTTCTTGATCATGCAATGATGGAACATGATAGATTCAAGAAATCCACAATGGAGACATCGCTCATGTTGAAACAAGGTTACCTGAACAAGATGATGGAAAATTATTGGAAGGGGACTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGAAGCCCAACCTACCTGA 1713 42.44 MTVEPRIDDPNDQFPIGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELRNIWQHVIRRKKFDPKDRMNSGNQDKVDSENGEEAADPNGKFNKKRKDQNYNDDDDQDYNEQENDDASTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSGDPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNTPACMGLANDPMISEVQHHEVNVGRKFGSQSSISVLSSTSESSRPSLDNLRCTGENWPKAVHSSRVHLNTIPSSNLSNIATSYHSQLRDNTTSALHIGNCLSDISSITSISTPSHDSRTDSQRQGATTSNRYNQMISKVPIQDWNDHKQDAYCHTTMARSSSNSLIPVNGAAETLPKHLENQNTFSGSKDFNVTNQAIVLDHAMMEHDRFKKSTMETSLMLKQGYLNKMMENYWKGTLDVIIIPLEHACEAQPT 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1686684 1690915 - Cp4.1LG06g03180.1 Cpe06g00305 471085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00305 570 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cpe06g00305 570 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cpe06g00305 570 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Cpe06g00305 570 MobiDBLite consensus disorder prediction 141 197 - -
Cpe06g00305 570 Gene3D - 17 153 - -
Cpe06g00305 570 SMART REC_2 18 130 IPR001789 GO:0000160
Cpe06g00305 570 CDD REC_typeB_ARR-like 20 134 - -
Cpe06g00305 570 PIRSF RR_ARR_type-B 1 553 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe06g00305 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 542 - -
Cpe06g00305 570 SUPERFAMILY CheY-like 17 142 IPR011006 -
Cpe06g00305 570 Gene3D - 194 257 - -
Cpe06g00305 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 542 IPR045279 GO:0009736
Cpe06g00305 570 MobiDBLite consensus disorder prediction 141 179 - -
Cpe06g00305 570 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Cpe06g00305 570 MobiDBLite consensus disorder prediction 426 446 - -
Cpe06g00305 570 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Cpe06g00305 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01344 Cpe-Chr3:10903145 Cpe06g00305 Cpe-Chr6:1686684 1.39E-98 dispersed
Cpe06g00305 Cpe-Chr6:1686684 Cpe07g01132 Cpe-Chr7:9932833 2.04E-112 dispersed
Cpe20g00834 Cpe-Chr20:7534369 Cpe06g00305 Cpe-Chr6:1686684 1.10E-23 dispersed
Cpe04g01298 Cpe-Chr4:10690459 Cpe06g00305 Cpe-Chr6:1686684 6.41E-59 transposed
Cpe18g00551 Cpe-Chr18:6077369 Cpe06g00305 Cpe-Chr6:1686684 3.65E-115 wgd
Cpe02g00336 Cpe-Chr2:1805259 Cpe06g00305 Cpe-Chr6:1686684 1.63E-99 wgd
Cpe04g01239 Cpe-Chr4:10362146 Cpe06g00305 Cpe-Chr6:1686684 1.28E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49648 PF00072 Response_reg 5.00E-23 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00305 - K14491 cpep:111788137 748.429