Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00313 ATGGCGTATCACAATCACCTCTCACAGGACCTTCCCCTCCACTTTTCTGACCACCAACAACACCACCAAAATCAGCCTCTCTCTGATACCTCTCTGCGTACCATTATGCCGGACCAGCTTGCCGGCGGTCACTCCTCGCCGGACCCCAAGTCCCACCATCATCACCACCATCATCCGCTGCAGACAGCGCCGAATTGGCTCAACAACGCACTGCTACGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCGTCACCACGGCCGCCGCTGCCGCAGCCGCCAATACCAATTTCCTCAACCTTCACACCACTGCATCGGATTCCACCGTCTCTCACTCCTCAAACCAATGGCTCTCCCGTCCGATCCTCCACCGCAACCATAGCGATGTCATCGACGATGTCACAGCCTCCGCCGGTGATGCTATGATCGGTGCCGCTACCGCCGCGCTCTCTCACGATTCCGGTGAGATGAAGAACGACGCTAATAGCGGCGATGGAATGAACAAGAGCGAGGGTATGGTGATGGAACCTAGCGCCGGTGGAGAGGGGGTTTTGAATTGGCATAATGCTCGTTATAAAGCCGAGATTCTCACTCATCCTCTTTACGAGCAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCCGTCGATCAATTACCGAGGATCGACGCCCAGCTCGCTCAATCTCAGAATGTCGTCGCTAAATACTCCGCTTTAACCCACACCGCTCCACCGCCCATGGTTGGTGATGACAAAGAGCTCGATCAATTCATGTCGTACAGTCCTGCTGTTTGGGTCGAGAAAATTTATGTTGTTTGCAGTGCAGCTGAGAAAAGGCTGCCCTGTCTGACGCATTATGTTCTTTTGCTTTGTTCTTTCAAAGAACAGCTCCAACAACATGTTCGTGTCCATGCAATGGAAGCTGTAATGGCTTGCTGGGACATTGAGCAGTCCCTTCAAAGCTTAACAGGAGTTTCGCCCGGTGAAGGTACGGGAGCAACGATGTCGGACGACGAAGACGACCAGGTCGACAGCGATGCAAATTTATTTGATGGGAGTTTAGAGGGTCCAGACACTATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAGCTGAAGCATGAGCTAAAATCGGGTTACAAGGAGAAAATTGTGGATATTAGGGAAGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGGGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAGCTGAAACAGATAAACAATTGGTTCATCAACCAAAGGAAGCGTAACTGGCACAACAATCCTTCAAGTTCTACCAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1485 51.18 MAYHNHLSQDLPLHFSDHQQHHQNQPLSDTSLRTIMPDQLAGGHSSPDPKSHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTVTTAAAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTASAGDAMIGAATAALSHDSGEMKNDANSGDGMNKSEGMVMEPSAGGEGVLNWHNARYKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALTHTAPPPMVGDDKELDQFMSYSPAVWVEKIYVVCSAAEKRLPCLTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHNNPSSSTNLKSKRKRSNAGENSSDRFK 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1740266 1745103 + Cp4.1LG06g03060.1 Cpe06g00313 471093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00313 494 Gene3D - 406 468 - -
Cpe06g00313 494 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 287 484 - -
Cpe06g00313 494 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 264 - -
Cpe06g00313 494 SMART ELK_2 385 406 IPR005539 GO:0003677
Cpe06g00313 494 SMART KNOX2_2 248 328 IPR005541 GO:0003677|GO:0005634
Cpe06g00313 494 ProSiteProfiles ELK domain profile. 385 405 IPR005539 GO:0003677
Cpe06g00313 494 MobiDBLite consensus disorder prediction 327 346 - -
Cpe06g00313 494 Pfam ELK domain 385 406 IPR005539 GO:0003677
Cpe06g00313 494 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 287 484 - -
Cpe06g00313 494 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 51 264 - -
Cpe06g00313 494 SMART KNOX1_2 191 235 IPR005540 GO:0003677|GO:0005634
Cpe06g00313 494 ProSiteProfiles 'Homeobox' domain profile. 405 468 IPR001356 GO:0003677
Cpe06g00313 494 Pfam Homeobox KN domain 425 464 IPR008422 GO:0003677|GO:0006355
Cpe06g00313 494 MobiDBLite consensus disorder prediction 462 479 - -
Cpe06g00313 494 SMART HOX_1 407 472 IPR001356 GO:0003677
Cpe06g00313 494 Pfam KNOX2 domain 287 327 IPR005541 GO:0003677|GO:0005634
Cpe06g00313 494 MobiDBLite consensus disorder prediction 37 62 - -
Cpe06g00313 494 MobiDBLite consensus disorder prediction 462 494 - -
Cpe06g00313 494 Pfam KNOX1 domain 193 234 IPR005540 GO:0003677|GO:0005634
Cpe06g00313 494 MobiDBLite consensus disorder prediction 480 494 - -
Cpe06g00313 494 SUPERFAMILY Homeodomain-like 407 472 IPR009057 -
Cpe06g00313 494 CDD homeodomain 408 469 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00313 Cpe-Chr6:1740266 Cpe13g00185 Cpe-Chr13:1447129 4.94E-98 dispersed
Cpe11g00311 Cpe-Chr11:1683405 Cpe06g00313 Cpe-Chr6:1740266 0 wgd
Cpe02g00470 Cpe-Chr2:2662202 Cpe06g00313 Cpe-Chr6:1740266 0 wgd
Cpe06g00313 Cpe-Chr6:1740266 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49650 PF03790 KNOX1 2.20E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00313 - - bhj:120085761 835.099