Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00327 ATGAAGCAGAGTATATCTGAGGCAGTATCATCATCATCCACCACGGGATTATCGGAGCAGTCGCAATCATCGTCGCTGTTGGAGAAGCCCCAATCGATATCGGCTGCAGCGGCGGCGGAGGATTTGGCTGTCGGGTCAAGGGACGGCGGCGGGGCGCAGGAAACGGTGACCGTCGATCGGCGGGGGGATTTCTCCGCGGTGTGTAGATGGACAGTACAAAATTTCCCGAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTTGAGGTTGGAGGTTACGATTGTCGTCTGTTGATATATCCAAAGGGGGATTCTCAAGCTCTGCCGGGGTATATTTCAGTCTACCTTCAAATCGTGGACCCGCGCGGCACATCGTCTTCCAAATGGGATTGCTTTGCGAGCTATCGTTTGGCCATCGTCAACGTTCTCGATGATTCGAAGACCGTTCATCGGGATTCTTGGCACCGTTTCTCGAGCAAGAAGAAGTCACACGGTTGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTCGGCTATTTGTATAATAACGAGTCCATTATGATCACTGCTGATATTCTAATCCTCAACGAGTCTGTAAATTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCCTCCGTTGTTGCTTCCCCTGCGCCGGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAAATGATAAAAACACAGAAAATAATGAGCCCAGTGTTCCCAGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCAGTTAATGGGACTGAGTATTTATCGATGTGTCTCGAGAGCAAGGATACCGAAAAAACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGAATGTCCGTGTTGAACCAGAAGCCTGCTTTGAACCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAATACCAGTTTGGGGTGGAATGACTATATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTGGTTGAAGATACCGCTGTGTTTAGTACCTCTTTTCATGTGATCAAGGAGTTCAGTAGTTTTTCAAAGAATGGTGGAGTAATTGGAGGGAGAAATGGGAGTGGAATTAGGAAATCAGATGGTCACATGGGCAAATTTACGTGGAGGATTGAGAACTTCATAAGGTTAAAGGACCTTTTGAAGAAGAGGAAGATTACTGGTCTTTGCATCAAGAGCAGGAGATTCCAGGTCGGGAATCGTGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGTCATCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTTGTAAACCAGAAGATGGAAGAGAAATCTGTCACAAAGGAGTCTCAAAACCGGTACTCCAAAGCCGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTTGTTCAGGATACTGTAATATTCTCAGCTGAGGTCCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGATCAAGACATGGAGTCAACTGGTTCCAGCTCTCTGATGGATAAGGCAGCAAAAAAAAGTTCATTCACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATCTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATAGGTGTCTACGAGTCCTTTGACACCATTTGCATCTATCTTGAGAGTGATCAGTCTGTTGGCAGTGATCCAGACAAAAACTTCTGGGTCAGATACAAAATGGCCGTGGTGAATCAAAAATATCCAGCAAAAACTGTGTGGAAGGAGTCTTCTATTTGTACGAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCAGATTTGCTAGAGGCAGAAGCGGGGTTTCTTGTACGAGATACAGTTATTTTCGTATGTGAAATATTGGACTGTTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAAGATGCTTTGACTACTGATCCGGACGAACTCATTGATTCAGAAGATAGTGAAGGAATAAGTGGTGATGAAGAAGACATATTTAGAAACCTTCTATCTACAGCTGGATTTCATCTAACATACGGAGATAATCCTTCACAACCACAGGTCACTTTGCGAGAAAAACTTTTAATGGATGCCGGTGCAATTGCAGGATTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTCTCTGGTTGCAATGATGGGAAGAAGGTCTCAAAGACAGATGAGTCGTCTCCCAGTTTAATGAACTTGTTAATGGGAGTCAAAGTTTTACAGCAGGCAATTATTGATTTATTGTTGGATATAATGGTCGAGTGTTGTCAACCTTCAGAAGCAAATTCAAAGCCTTCTGTTCCTAGCAGCGGTGCTACTACCACACCACTGGAAGGTGAAATTGAAAATGGAGCGATAGAGGCTGCAGATTTTCCTCCATTTCAGAGATTGGATTCCGCTGATGAAAGTAGTAGTGCACCTGCTGTACAAAGCTCTGACATGATTAGAACTGATAGGCAGGGTACGTCTCTACCTGATGAGCTACTACATCCACCTGAAACGTCTGCTGGGGTTTCAGAGAATGTTTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGATTGATTGTAAATTCACTGAGAGCCCTAGATGGGGCTATCCCCCGAGGATGTCCTGAGCCTAGAAGACGGCCTCAGTCCGCGCAAAAGATTGCTCTTGTGTTGGATAAAGCTCCGAGACATCTACAGTCTGACCTGGTTGCATTAGTACCTAAATTGGTTGAGCATTCAGAACATCCATTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCTGGTGCTGAGCCAGCACTGCAGATACCTGTTTTTGGTGCTCTTAGTCAATTAGAGTGTGGCACCGAAGTTTGGGAACAGGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAGCTATAGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCTGTGAGATCCGTACGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTACATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGCTGATGATTTCCGCTCAAAAATATCACGTGACCTTTTCTTATTTGGTGAACCTGGCCCTGCTTCAGAAAGTTTGCATCCGTTGGATGAACAAGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTATTTGAGATGTTATCAATACCTTGTCTTGCCGTTGAAGCATCACAAACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTTGCCGTGGTGTTGGAAAAACGTCTTTCTCAAAAAGCAAATAGCAATACTAGATTCGTAGCTGAAAGCTTCCAGCATGGAGATTCTGTAATAGATGGAGAAACTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTGCTATTGTTGGTCTTGCTGAAACATTAGCACTCTCTAGAGACCCTTGCGTTCGAGGATTTGTGAAAATGTTGTATCCATTATTGTTTAAGCGGTATGCAAGCGAGTCATATCGAGCCAGGATGCTAAAAAGATTGGTCGACCTTGTAACCAGCAGTACAGATAATAACCGTGAAGTAGATATGGATTTGGAAATTCTGGTTATGTTGATTGGTGAGGAACAAGAAATAATTAGACCTGTGCTAAATATGATGCGAGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAACTGTTCTGTTACAAAAACTGAGCGAATCTGAAGCCATGAACAATCGCCTGAAGATTGAGATGAAGGCTGAGTTGGAGCGATTTTCTCGCGAGAAGAAGGAACTTTCTGAACAAGTACATGACATTGATTGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAACAGAGAAGAAAGTTCTCCATGAACGTCTACATGATGCTGAGAATCAAATTGCACAATTGAAATCTCGAAAACGGGAGGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAAAGATTGAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGCATGCAAATGAGAATATGACGAGGGAAGAAATCCGGAAGTCACTGGAAGATGAAGTTCGCAGGCTTACACAAACAGTTGGACAAACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCAAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAGGAAATGTCAAGACATGCCCCTCTATATGGTGCTGGTTTGGAAGCATTGTCAATGAAGGAGCTCGAGACGTTATCTCGAATTCACGAAGAAGGGTTAAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGTCCGGCTGGCAATCCTCTTGTGAGCCCCCATTCTCTCTCTCACGGTCATGGGTTGTACACTGCTGCACCTCCCTCGATGGCTGTAGGGAAGCCCTCTTCACGCATGCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATTCTTGA 5013 43.69 MKQSISEAVSSSSTTGLSEQSQSSSLLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISVYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLYNNESIMITADILILNESVNFTRDNNEPASSMMMASSVVASPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVEDTAVFSTSFHVIKEFSSFSKNGGVIGGRNGSGIRKSDGHMGKFTWRIENFIRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMESTGSSSLMDKAAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDLLEAEAGFLVRDTVIFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGCNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEANSKPSVPSSGATTTPLEGEIENGAIEAADFPPFQRLDSADESSSAPAVQSSDMIRTDRQGTSLPDELLHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAIPRGCPEPRRRPQSAQKIALVLDKAPRHLQSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALQIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAAAIDFVFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVHSWGDVSDIILRDIDCDDDADDFRSKISRDLFLFGEPGPASESLHPLDEQDLHAARHFSDIYILFEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLSQKANSNTRFVAESFQHGDSVIDGETSEQLRVQRDDFTAIVGLAETLALSRDPCVRGFVKMLYPLLFKRYASESYRARMLKRLVDLVTSSTDNNREVDMDLEILVMLIGEEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKTVLLQKLSESEAMNNRLKIEMKAELERFSREKKELSEQVHDIDCQLEWLRSERDDEIVKLTTEKKVLHERLHDAENQIAQLKSRKREEMKKVVKEKNALAERLKSAEAARKRFDEQLKRHANENMTREEIRKSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGNPLVSPHSLSHGHGLYTAAPPSMAVGKPSSRMPNGSGIHSNGHVNGGAVGPWFNHS 1670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1811813 1822148 - Cp4.1LG06g03350.1 Cpe06g00327 471107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00327 1670 ProSiteProfiles MATH/TRAF domain profile. 567 691 IPR002083 GO:0005515
Cpe06g00327 1670 CDD MATH 569 691 IPR002083 GO:0005515
Cpe06g00327 1670 CDD MATH 69 195 IPR002083 GO:0005515
Cpe06g00327 1670 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 397 555 IPR008974 GO:0005515
Cpe06g00327 1670 Coils Coil 1385 1423 - -
Cpe06g00327 1670 SUPERFAMILY TRAF domain-like 567 692 - -
Cpe06g00327 1670 Coils Coil 1509 1550 - -
Cpe06g00327 1670 PANTHER TRAF-LIKE FAMILY PROTEIN 29 1670 - -
Cpe06g00327 1670 SUPERFAMILY TRAF domain-like 66 203 - -
Cpe06g00327 1670 MobiDBLite consensus disorder prediction 1 31 - -
Cpe06g00327 1670 CDD MATH 400 535 IPR002083 GO:0005515
Cpe06g00327 1670 SMART math_3 572 672 IPR002083 GO:0005515
Cpe06g00327 1670 SMART math_3 67 175 IPR002083 GO:0005515
Cpe06g00327 1670 SMART math_3 401 516 IPR002083 GO:0005515
Cpe06g00327 1670 SMART math_3 236 349 IPR002083 GO:0005515
Cpe06g00327 1670 SUPERFAMILY TRAF domain-like 229 374 - -
Cpe06g00327 1670 MobiDBLite consensus disorder prediction 1 32 - -
Cpe06g00327 1670 MobiDBLite consensus disorder prediction 885 906 - -
Cpe06g00327 1670 ProSiteProfiles MATH/TRAF domain profile. 399 535 IPR002083 GO:0005515
Cpe06g00327 1670 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 224 374 IPR008974 GO:0005515
Cpe06g00327 1670 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 556 693 IPR008974 GO:0005515
Cpe06g00327 1670 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 202 IPR008974 GO:0005515
Cpe06g00327 1670 Coils Coil 1435 1501 - -
Cpe06g00327 1670 CDD MATH 232 364 IPR002083 GO:0005515
Cpe06g00327 1670 SUPERFAMILY TRAF domain-like 400 541 - -
Cpe06g00327 1670 MobiDBLite consensus disorder prediction 887 906 - -
Cpe06g00327 1670 Pfam MATH domain 73 197 IPR002083 GO:0005515
Cpe06g00327 1670 Pfam MATH domain 431 537 IPR002083 GO:0005515
Cpe06g00327 1670 Pfam MATH domain 580 687 IPR002083 GO:0005515
Cpe06g00327 1670 ProSiteProfiles MATH/TRAF domain profile. 231 368 IPR002083 GO:0005515
Cpe06g00327 1670 PANTHER TRAF-LIKE FAMILY PROTEIN 29 1670 - -
Cpe06g00327 1670 ProSiteProfiles MATH/TRAF domain profile. 65 195 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00327 - - - cmos:111446723 2999.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00443 Cpe06g00327 CCT
Cpe02g00443 Cpe06g00327 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00327 Cpe-Chr6:1811813 Cpe08g00937 Cpe-Chr8:7346446 3.11E-07 dispersed
Cpe02g00443 Cpe-Chr2:2499748 Cpe06g00327 Cpe-Chr6:1811813 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00327 Cpe_Chr06 FPKM 11.010149 10.936004 26.082521 22.109802 5.88207 6.465256 6.030091 7.615206 9.665105 6.905187