Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00330 ATGATGCAGAATCGAAGTCCGCCCAAGCATCGACACGATGGCACCTCGCCGTTGCCTCTTGGAATGGACTGGAGCCCTCCTCCTCGAAAATGGAATGGGAAGAACACAGTTTGGCCTCATGACCATCGCACTGGATGGAGTTACTGTGTCATAATACCTTCATGGGTTGCTCTTCCTAAATCACGAGTTGCAGATCCCGTAGTGGGACAGTTCTACAGGGTTCAGGTTGGTGTACAGTCACCTGAGGGGATCACAGCGATGCGGGGAGTATTAAGGCGATTTAATGATTTCTTGAATTTATTTTCCGATGTTAAAAAGGCTTTTCCAAAGAAAACTATTCCACCAGCTCCATCCAAAGGAATCTTACGGGTGAAAACCAGGACGCTCTTAGAAGAGAGAAGGCGCTCTTTGGAGGAGTGGTTGACAAAGCTGTTGTCTGACATCGACATATCAAGAAGTGCTGCAGTAGCGTCCTTCCTTGAGCTAGAAGCTGCTGCTAGGTCTTTTTTCCAAAATGATAATCAGGGGCCTTCAGATGAATACCCTGATTATAACAGTAAAATTTCTGCACATCAATCCCCTCCTAATTCAAGCTCATCTACTGTTGCCGGTGGCTTGTCGCTTGCATCAGATTATGGCAGTGATACTGCTTATGAGGCGTCTGAACTTGGTACAGCAAGTCTGGGAAGAGATGATAATTCTGAAATAGCCATGGATGATTTAGCTCTGGACGACGATCTTTCCAGTCCAATTGAAAAACTTGTGAAGTATGGATTGTCCAATATTGATGAGGGACTCTTTATGGGTCAGGCCATTATAGAGCAGTTGGAAGGCCTTCCAAAACACAAATCTCGTCCTGGATATAATAGCAATTTAAAGGATGGGCACAATGGTAGTACTTCCAAGGCATCGTACTTGAATAAAAATGGACTGGTGCCGTTTGCAGATCCCGAGCATGGCAAGGTAATTGGTCATGCTCGCAAGCTGTCTGATGAGAGTGTGGCAAGTGATGCAAGTTCTCTGAGAGGTGGAGAAATTTCAAGCTTTTCACCATTAGGCAATGGCTCACTTGACCATTCAGGTGCTGAGGTTTCAAATGCAGTCGAATTTCTTAGCAACCCTGAATTGCATTTTTCACATGATGCACTGCTCTTCCCAAAGGATCATCGCCATAAATTGAATAGGGTTCTTTCAACAATGCATCAAAGGCTAGTGACTGCAAAAACAGACATGGAGGACCTTATATCAAGATTGAACCAGGAAATAGCCGTGAAAGATTACCTTAGAACAATGGTTAAGGATTTGGAAGTAGAACTCGAAACAAATAAGCAGAAAAGTAAAGAAAACCTTCAACAAGCTATTTTGATGGAGAGGGAAAAGGTTACCCAAATGCAGTGGGAAATGGAGGAACTTCGTCACAAATCATTGGAAATGGAGTTAAAATTGAAGTCTAAAGAGGGTGAAGATCCATTTTCAGTGCCTACAAAAGAATTTACCCTCCAGGAGAAGGTTGCTTTGCAAGAAGAGCTTGAATCCACGAAAGAGCAACTAAATAATGTTTTTAAGCGATTTGAAGAGCTTGAAGGAAAATCAAAAGCAGACATCAGGGTTCTTGTTAAAGAGGTCAAATCTCTTCGAAGCACCCAAGCCAAACTTAAAGAAGAGCTTAGTCAAACACTCCAACAGAAGTCTGAGACTGAGGAAAACCTTCTACTCGCTGGCAACCAAACCGCTACTTCAATGGCAGATGATGCCGTTCAAGATCACCACAACAGTTCGATTGAGATAGACACAGAGCTGAGGATGATACTTAAAGACATCTAG 1824 43.31 MMQNRSPPKHRHDGTSPLPLGMDWSPPPRKWNGKNTVWPHDHRTGWSYCVIIPSWVALPKSRVADPVVGQFYRVQVGVQSPEGITAMRGVLRRFNDFLNLFSDVKKAFPKKTIPPAPSKGILRVKTRTLLEERRRSLEEWLTKLLSDIDISRSAAVASFLELEAAARSFFQNDNQGPSDEYPDYNSKISAHQSPPNSSSSTVAGGLSLASDYGSDTAYEASELGTASLGRDDNSEIAMDDLALDDDLSSPIEKLVKYGLSNIDEGLFMGQAIIEQLEGLPKHKSRPGYNSNLKDGHNGSTSKASYLNKNGLVPFADPEHGKVIGHARKLSDESVASDASSLRGGEISSFSPLGNGSLDHSGAEVSNAVEFLSNPELHFSHDALLFPKDHRHKLNRVLSTMHQRLVTAKTDMEDLISRLNQEIAVKDYLRTMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHKSLEMELKLKSKEGEDPFSVPTKEFTLQEKVALQEELESTKEQLNNVFKRFEELEGKSKADIRVLVKEVKSLRSTQAKLKEELSQTLQQKSETEENLLLAGNQTATSMADDAVQDHHNSSIEIDTELRMILKDI 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1830513 1837952 + Cp4.1LG06g03260.1 Cpe06g00330 471110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00330 607 Pfam PX domain 89 161 IPR001683 GO:0035091
Cpe06g00330 607 Coils Coil 496 530 - -
Cpe06g00330 607 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 570 - -
Cpe06g00330 607 SMART PX_2 56 163 IPR001683 GO:0035091
Cpe06g00330 607 ProSiteProfiles PX domain profile. 50 167 IPR001683 GO:0035091
Cpe06g00330 607 Coils Coil 468 488 - -
Cpe06g00330 607 MobiDBLite consensus disorder prediction 1 26 - -
Cpe06g00330 607 MobiDBLite consensus disorder prediction 171 204 - -
Cpe06g00330 607 Coils Coil 535 569 - -
Cpe06g00330 607 Gene3D - 69 172 IPR036871 GO:0035091
Cpe06g00330 607 SUPERFAMILY PX domain 41 163 IPR036871 GO:0035091
Cpe06g00330 607 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 570 IPR044588 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00330 - - - bhj:120085923 986.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00446 Cpe06g00330 CCT
Cpe02g00446 Cpe06g00330 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00747 Cpe-Chr12:6885903 Cpe06g00330 Cpe-Chr6:1830513 8.30E-11 wgd
Cpe17g00613 Cpe-Chr17:5058114 Cpe06g00330 Cpe-Chr6:1830513 1.04E-06 wgd
Cpe02g00446 Cpe-Chr2:2522500 Cpe06g00330 Cpe-Chr6:1830513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00330 Cpe_Chr06 FPKM 13.339927 15.211142 14.340029 16.343645 17.87599 19.11693 18.220404 19.463583 17.492449 18.587395