Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00332 ATGGCTACACAAGAAGCTGCTTCTCAAGCGGTTCCTTCTTTTGAGTATGAGCTTCTTGATGGCGATCCTGATCATGTCAGGACAGTGGTTGCTTCATCAAACTACCCAAGCCCTAGGATTGAACCTTCAAAGTTATGCATAATCATGAAGTTCTATGAAGGATCAGTTGCTGATAAAATGGCTCGTCTTAAAGATGGAAAGCTTTCACTCCCTGATGTATTGAGGTATGGAATCAGTCTATCTCAGGGGATTTTAGAATTGCACTCGAAAGAGGTCTTGGTTCTTAATCTGAAACCTTCGAACGTGCTCCTTTCTACCAAGGACCAAGCAATTTTGGGAGATCTAGGAATTCCTTTTCTACTACGTGGTGTACCGATACCGAATACGGATATAATTCAGAGACTTGGGACACCTAACTATATGGCACCGGAGCAATGGCAGCCAGAAGTTAGAGGTCCGATATCGTATGAAACTGATTCGTGGGGGTTTGGTTGCTGCGTGGTTGAGATGTTGACTGGTGTTCCGCCATGGCATGGGAAATCAGTTGATGAAATATTTCATTCTGTTGTCAGGAAACAAGAAAAGCCTTGTATTCCAAGTGGACTTCCTCCTCTAATTGAGAATGCTCTTTTCGGTTGCTTTGAATATGACTTGAGGAGTCGTCCTTTGATGACAGATATACTAAATGTGTTCCAGAGCTCTCTACAAGGTGTTAACAATGATTGGCAAGCCATTGGGAGTTCAAAAGTGTTGAACAAATCAAGTGCCACTGGACATACTGAATGGTTTCTCTCAAAAGATCACTTGCAAGTGAACGACTTGGTGCGTTCGAGAAAGCCATTGAACTCGTGCAAGTCAGATAATATGAACATCCCTGAAGGAAGGATAGTGGGGTTGGAACGTGAGACTGAAAAGGATGCTTTTGTCTTGGTGAGGGTTCGTGGAATCCATGATCCTGTAAGAGTGTGTGCTTCTACACTTGAGCGGGTAAGTTTCGGGTTAGCAGCTGGTGACTGGATACGATTGAAGGAATCCGAGAAGAAACATTCTCCAGTGGGAATTCTTCATTCAATCGATCGTGTTGGCAATGTAGCTGTTGCTTTTATCGGTGTAGAAACCCTCTGGAAGGGTAACTCTTCCCAGTTTCAGATGGCAGAATCGTTTTGCGTTGGCCAATTTGTACGGATAAAAGCCAGCGTTCTGAGACCACGATTCGAATGGCCTCGTAAGAAAGGAGGTGTCTGGGCTACAGGGAGGATTTGGTGGGTCCTGCCCAATGGCTGCCTCATGGTCAAGTTCCCTGGAATTCTCGCTTTCAAAGAAGAATGTGATACGTACATGGCCGATCCAGCTGAGGTCGAGGCAGTTAATTTTAGCACGTGTCCAGGGATGGTGAAAAAGTACCAACATCTTGAGGATTTTCACTGGTCAGTTAGACCAGTTCTGATGGCATTTGGGTTGTTCACAGCAATGAAGCTGGGAATTGCATTTGGGAAGAAAGTGGGGAGGTCAAAGGTGAAGAAGCCGCAAGGCAACCTTGTGTATTGTGAATCTCAACATACTGCTGAAGGTCAGAATGCCAACAATCCAGCTTGGATTCCTCCACCTGTGAAAAATATTCTTTTCCGAGATGGCGCTGGCACGGTCGCTCGATGA 1656 45.11 MATQEAASQAVPSFEYELLDGDPDHVRTVVASSNYPSPRIEPSKLCIIMKFYEGSVADKMARLKDGKLSLPDVLRYGISLSQGILELHSKEVLVLNLKPSNVLLSTKDQAILGDLGIPFLLRGVPIPNTDIIQRLGTPNYMAPEQWQPEVRGPISYETDSWGFGCCVVEMLTGVPPWHGKSVDEIFHSVVRKQEKPCIPSGLPPLIENALFGCFEYDLRSRPLMTDILNVFQSSLQGVNNDWQAIGSSKVLNKSSATGHTEWFLSKDHLQVNDLVRSRKPLNSCKSDNMNIPEGRIVGLERETEKDAFVLVRVRGIHDPVRVCASTLERVSFGLAAGDWIRLKESEKKHSPVGILHSIDRVGNVAVAFIGVETLWKGNSSQFQMAESFCVGQFVRIKASVLRPRFEWPRKKGGVWATGRIWWVLPNGCLMVKFPGILAFKEECDTYMADPAEVEAVNFSTCPGMVKKYQHLEDFHWSVRPVLMAFGLFTAMKLGIAFGKKVGRSKVKKPQGNLVYCESQHTAEGQNANNPAWIPPPVKNILFRDGAGTVAR 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1840373 1846506 - Cp4.1LG06g03360.1 Cpe06g00332 471112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00332 551 SMART serkin_6 16 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00332 551 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00332 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 44 548 - -
Cpe06g00332 551 SUPERFAMILY Protein kinase-like (PK-like) 41 232 IPR011009 -
Cpe06g00332 551 Gene3D Transferase(Phosphotransferase) domain 1 53 278 - -
Cpe06g00332 551 Pfam Protein kinase domain 41 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00332 551 PANTHER OS06G0639500 PROTEIN 44 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00332 - - - csv:101208616 943.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00473 Cpe-Chr5:2754091 Cpe06g00332 Cpe-Chr6:1840373 4.30E-31 dispersed
Cpe06g00332 Cpe-Chr6:1840373 Cpe03g01453 Cpe-Chr3:11593287 4.88E-17 dispersed
Cpe06g00332 Cpe-Chr6:1840373 Cpe16g00854 Cpe-Chr16:8137533 4.22E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g495 . Blo12g01073 . Bda03g00074 . . Bma04g00070 . . . . . Car09g00396 . . . Cpe06g00332 . . . . . . . Cla05g01732 Cam05g1845 Cec05g1857 Cco05g1917 Clacu05g1833 Cmu05g1716 Cre05g1847 . . Cone17ag1016 . Lsi04g02122 Csa03g04328 Chy04g00373 . . . . . . Bpe04g00059 . . Sed13g2018 . Cmo09g00458 Cma09g00451 . . . . . Bhi09g02231 Tan01g3632 Cmetu04g2456 . Hepe01g2014 . . . . . . . . . . . . Cme04g00415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005420 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 4 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62463 PF00069 Pkinase 2.20E-20 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00332 Cpe_Chr06 FPKM 0.0 0.271869 0.0 0.0 0.152915 0.40988 0.465036 0.0 0.109631 0.0