Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00339 ATGGCGCCTAGTACGATCCGGAAGGCGATCGGAGCGGTGAAGGATCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATACGGCGCCGGACCTTGAGGTGGCGATCGTGAAGGCCACTAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCCGGGAGATTTTGAGCCTGACATCGTATTCTCGTGGCTACGTGAGTGCGTGTGTGGTGGCGGTTTCGAAGCGTCTGGCCAAGACGAGGGATTGGATCGTGGCGCTCAAGGCACTCATACTTGTGCATAGTACGATCCGGAAGGCGATCGGGGCGGTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATACGGCGCCGGACCTTGAGGTGGCGATCGTGAAGGCCACTAGCCATGACGATGATCCGGCCAGTGAGAAGTACATCCGGGAGATTTTGAGCCTGACATCGTATTCTCGTGGCTACGTGAGTGCGTGTGTGGTGGCGGTTTCGAAGCGTCTGGCCAAGACGAGGGATTGGATCGTGGCGCTCAAGGCACTCATACTTGTGCATAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCCACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGACTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTATTCGAACTTATGCATTTTACTTGGATCAACGGTTGTTGAATGAAGGAGACCCGGTGTTTCAGGACGAGATCTTGTATGCCACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGACTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTATTCGAACTTATGCATTTTACTTGGATCAACGGTTGGAATTGGTGTTGTTTGAAAAGAAAGGTGGTAGTGCAAAGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCGAGGCCCTATGATAACGGTTATGGTGAGTATAGGGGCGAGAGAGAGTATGGAAACCATGGTGGGATGAGGAGGTCGAGATCTTTTGGTGACGTGGGGGAATCGATGGAGAGGGAGGGGCATGGGCGTAACAAGGGGCCTGTGACCCCATTGAGGGAAATGCCAATCGAGAGAATCTTCGGAAAGATGGGACATTTGCAGAGATTGTTGGATAGATTCTTGTCGTNATGGGATCACTCAGCTTTTATTCGAACTTATGCATTTTACTTAGATCAACGACTGGAATTGGTGTTGTTTGAAAAGAAAGGTGGTAGTGCAAAGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCGAGGCCCTATGATAACGGTTATGGTGAGTATAGGAGCGAGAGAGAGTACGGAAACTATGGTGGGATGAGGAGGTCGAGATCTTTTGGTGACGTAGGAGAATCAATGGAGAGGGAGGGGCAGGGGCGTAACAAGGGGCCTGTGACCCCATTGAGGGAAATGTCAATCGAGAGAATTTTCGGTAAGATGGGACATTTGCAGAGATTGTTGGATAGATTCTTGTCGTGTCGACCGACGGGGTTGGCGAAGAGTAGTAGGATGATTTTGTATGCTTTGTATCCCCTAGTGAGGGAGAGTTTTCAGTTGTATGCAGATATTTGCGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTATTCTGACTGTATGAAGGCATTTGATGCATATGGTAGTGCAGCCAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGACACAGGAGTTGCTAGATCCTCCGAGTATCCAGAGGTGCAGAGAATTACCAGCAAGTTACTGGAGACATTGGAGGAATTTCTAAGGGAAAGAGGGAAGGCGCCAAAGAGCCCCGAGAGGGAGCCACNCGGAGTTGCTAGATCCTCTGAGTATCCAGAGGTGCAGAGAATTACCAGCAAGTTACTAGAGACATTGGAGGAATTTCTGAGGGAAAGAGGGAAGGCGCCAAAGAGCCCCGAGAGGGAGCCACCTCCGCCCGCTCCTCAAGAGGAAGAACCAGTGCCTGATATGAATGAAATAAAGGCTCTTCCCCCACCTGAAAATTATACTCCACCTCCGCCCGAACCGGAGCCCCAGCCTGCACCTATACCTCAACCACAAGTCACGGAAGACTTGGTGAATCTGAGAGATGATGCAGTTAGTGCAGATGCTCAAGGTAACAAGCTGGCACTGGCTCTGTTTGCTGGCCCAGCAGCTAATGGGGCAAATGGATCCTGGGAAGCTTTCCCTTCTGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCCGATTGGGAGTTGGCGTTGGTTGAGACAGCCAGCAATTTATCGAGGCAGAAGGCAGCGCTTGGCGGTGGACTCGACCCATTGTTGCTAAATGGCATGTATGATCAAGGAATGGTCAGGCAGCACACTAGCACTGCACAGCTGAGCGGTGGAAGCGCTAGCAGTGTAGCATTACCAGGCCCTGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCCGATGGAACCGTCCAGGCTGTGAACCAGGATCCTTTCGCTGCATCATTAAGCGTTCCACCACCTTCATACGTGCAAATGGTGGAGATGGAGAAAAAACAGCATATGCTGGTGCAGGAACAGCAGTTATGGCAGCAGTATGCAAGAGATGGGATGCAGGGGCAGAGTAGTTTGAACAAAATGAGTAACCCCCCAGGTTACTACAACATGGCAGCCGGACCAATGGCCCCGATGCCGTACGGGATGCCTCCGATGAACGGCAGCGGGTATTACTACATTCNGTTATGGCAGCAGTATGCAAGAGATGGGATGCAGGGGCAGAGCAGTTTGAACAAAATGAGTAACCCCCCAGGTTACTACAACACGGCAGCCGGACCAATGGCTCCGATGCCCTACGGGATGCCTCCGATGAACGGCAGCGGGTATTACTACATTCCTCAATGA 3042 50.76 MAPSTIRKAIGAVKDQTSIGIAKVASNTAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVVAVSKRLAKTRDWIVALKALILVHSTIRKAIGAVKDQTSIGIAKVASNTAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVVAVSKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFIRTYAFYLDQRLLNEGDPVFQDEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFIRTYAFYLDQRLELVLFEKKGGSAKGNSRGDDRFDGRDDFRSPPPRPYDNGYGEYRGEREYGNHGGMRRSRSFGDVGESMEREGHGRNKGPVTPLREMPIERIFGKMGHLQRLLDRFLSXWDHSAFIRTYAFYLDQRLELVLFEKKGGSAKGNSRGDDRFDGRDDFRSPPPRPYDNGYGEYRSEREYGNYGGMRRSRSFGDVGESMEREGQGRNKGPVTPLREMSIERIFGKMGHLQRLLDRFLSCRPTGLAKSSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKAPKSPEREPXGVARSSEYPEVQRITSKLLETLEEFLRERGKAPKSPEREPPPPAPQEEEPVPDMNEIKALPPPENYTPPPPEPEPQPAPIPQPQVTEDLVNLRDDAVSADAQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHMLVQEQQLWQQYARDGMQGQSSLNKMSNPPGYYNMAAGPMAPMPYGMPPMNGSGYYYIXLWQQYARDGMQGQSSLNKMSNPPGYYNTAAGPMAPMPYGMPPMNGSGYYYIPQ 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1877569 1880879 + Cp4.1LG06g03290.1 Cpe06g00339 471119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00339 1013 PANTHER - 96 241 - -
Cpe06g00339 1013 PANTHER - 240 402 - -
Cpe06g00339 1013 ProSiteProfiles ENTH domain profile. 115 251 IPR013809 -
Cpe06g00339 1013 SMART enth_2 30 118 IPR013809 -
Cpe06g00339 1013 SMART enth_2 121 251 IPR013809 -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 335 349 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 309 327 - -
Cpe06g00339 1013 ProSiteProfiles ENTH domain profile. 24 98 IPR013809 -
Cpe06g00339 1013 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 95 IPR045192 GO:0048268|GO:0072583
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 477 501 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 668 690 - -
Cpe06g00339 1013 CDD ANTH_N_AP180_plant 123 241 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 430 453 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 309 377 - -
Cpe06g00339 1013 PANTHER CLATHRIN ASSEMBLY PROTEIN 96 241 IPR045192 GO:0048268|GO:0072583
Cpe06g00339 1013 PANTHER CLATHRIN ASSEMBLY PROTEIN 646 939 IPR045192 GO:0048268|GO:0072583
Cpe06g00339 1013 PANTHER CLATHRIN ASSEMBLY PROTEIN 403 644 IPR045192 GO:0048268|GO:0072583
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 836 854 - -
Cpe06g00339 1013 Gene3D - 242 300 IPR008942 -
Cpe06g00339 1013 Gene3D - 101 241 IPR008942 -
Cpe06g00339 1013 Gene3D - 2 100 IPR008942 -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 668 734 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 357 373 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 430 463 - -
Cpe06g00339 1013 Gene3D ANTH domain 496 641 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cpe06g00339 1013 SUPERFAMILY ENTH/VHS domain 31 98 IPR008942 -
Cpe06g00339 1013 SUPERFAMILY GAT-like domain 503 633 - -
Cpe06g00339 1013 SUPERFAMILY ENTH/VHS domain 240 296 IPR008942 -
Cpe06g00339 1013 PANTHER CLATHRIN ASSEMBLY PROTEIN 240 402 IPR045192 GO:0048268|GO:0072583
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 708 728 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 632 655 - -
Cpe06g00339 1013 SUPERFAMILY ENTH/VHS domain 121 244 IPR008942 -
Cpe06g00339 1013 Pfam ANTH domain 31 99 IPR011417 GO:0005543
Cpe06g00339 1013 Pfam ANTH domain 398 633 IPR011417 GO:0005543
Cpe06g00339 1013 Pfam ANTH domain 122 241 IPR011417 GO:0005543
Cpe06g00339 1013 PANTHER - 5 95 - -
Cpe06g00339 1013 MobiDBLite consensus disorder prediction 836 861 - -
Cpe06g00339 1013 PANTHER - 646 939 - -
Cpe06g00339 1013 PANTHER - 403 644 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00339 - - - csv:101207892 863.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01664 Cpe-Chr1:10356581 Cpe06g00339 Cpe-Chr6:1877569 1.17E-13 dispersed
Cpe04g01193 Cpe-Chr4:10114187 Cpe06g00339 Cpe-Chr6:1877569 4.43E-38 dispersed
Cpe06g00337 Cpe-Chr6:1864979 Cpe06g00339 Cpe-Chr6:1877569 1.02E-13 dispersed
Cpe06g00339 Cpe-Chr6:1877569 Cpe15g00250 Cpe-Chr15:2315104 3.47E-32 dispersed
Cpe06g00338 Cpe-Chr6:1872179 Cpe06g00339 Cpe-Chr6:1877569 2.23E-18 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00339 Cpe_Chr06 FPKM 6.157667 6.19362 9.916371 8.243543 12.164499 12.672246 13.053535 0.50812 0.521301 0.744586