Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00342 ATGTCGAAGCTCTTCGCCTATTCCGGCCGTGAAGATTTTTTCCCTGTATACCCAAATCCCAAGAACTCAAGTCTATTCTTGTCCCTTCCTCACCACGTTGATGTCTATTTTCCCCCTCGCAAGAGGTCTCGCATGTCTTCTTCCATTGAGTTTGGTGGAGAAGGGGTTGTATTAAAGGAAGATGTCTCTATTGAAATTCTTCCAGATGAGTGCCTCTTTGAGATTTTCAGACGATTGTCTGGTGATAAAGAAAGGAGGGCCTGTGCAGGCGTTTCTAAACGATGGCTTATGCTTATGAGCAACATATCTTGCCACGATTTGATTTCTGAGGATGAGATGGCCACGAAGGAGATTGAAGACATTGAAATTGAGAGTGATGGATATCTGTCAAGGAGCTTGGAAGGGAAAAAGGCAACAGATCTCACACTTGCTGCCATTTCTGTTGGAACTGCAAGTCGAGGGGGGTTAGGCAAGCTTGTGATCCGTGGAAATTATCTTGTCAGCAAGGTGACCGACCTTGGACTCGGGGCAATTTCTCATCGGTGTCAATCTCTGAGGGTTCTTTCTTTGTGGAATCTGTCTTCCATTGGAGATGAAGGTCTCTGTGAGATTGCCAAGGTTTCTCACCAGTTGGAGAAACTTGATCTCTGTCGGTGCCCTGCTATTTCTGACAAGGCTGTGGTTAAGATAGCTATGAGCTGCCCTAAGTTGACTGATATTTCAATAGAATCTTGTGCAAAAATTGGAAATGCAAGTCTGCGAGCTATTGGGCAGTTCTGCCCCAATCTCAAGTCCATTATGATTAAAGATTGCCCACTTGTTGGAGATGAAGGAATTGTAAGTTTGTTGTCTCTGAACACTTGTGTCATGAACAAGGTGAAGCTTCAAGCTTTGAACGTTTCTGATGTGTCTCTTGCTGTTATTGGGCACTATGGCAAGGCAGTTACCGACGCTGTCCTTACCGATCTTAAAAACGTTAGCGAGAAAGGGTTCTGGGTCATGGGCAATGGTCAGGGACTACAAAACTTGAAGTCACTCACAATTTCCTCCTGCAATGGAGTGACGGACATGGGGATCGAATCTATTGGAAAAGGTAGTCCAAATTTAAAGCACTTGTCTCTAAGAAAGTGTTCTTTCTTATCTGATAAAGGCATGGTCTCTTTTGCAAAAGCTGTAAGGTCGCTTGAGTGCTTGCAATTAGAGGAGTGCCATAGGATTACTCAACTTGGGTTCTTTGGTATCCTTTTGAACTACCGTAAAAGTTTGAAAACTCTTTCTTTAATAAACTGCTTGGGAATTAAGGACATGAACTCAGAATTGCCTATCTCGGCCTCTAGTGGATCCTTGCGGTCGTTGACCATCCGCAACTGCTATGGTTTTGGCAACAGGAACCTTGCTTTACTGGGCAAGCTATGTCCCCAGCTGCAGAATGTGGATTTTGGTGGCCTTGTTGGAATTGACGAATGTGGGTTTCTAGCTTGGCTTCAAAACTGTCGGTCGAGTTTAGTGAAGATGGACGTTAGTGGTTGTGCCAACCTGACTGACAAGGTGGTTTCATCCATAATCGAGCGCTATGGTTCGACGCTCGAAATGCTTAATCTCGATGGCTGTAGTAACATCACCGATGCTAGCTTGACTTCCATTGCAAACAACTGCCCATTACTCAGTGATCTCGATGTCTCGAAGTGTTCGATCACCGATTCAGGGATTGCATCTCTAGCCCGCGCCAAGCAACTGAGTCTACAAGTCTTTTCGGTCGCGGGTTGTTCATCTGTATCGAATAAATGCCTGGCTGACTTGATCAAATTGGGCGAGACTCTTGTGGGTCTGAACATCCAGCACTGTAATGCTATCAGCGGCAGCACTGTTGATCTGCTTGTGGAGAAGCTCTGGAGGTGTGACATTCTTTCATAA 1914 45.14 MSKLFAYSGREDFFPVYPNPKNSSLFLSLPHHVDVYFPPRKRSRMSSSIEFGGEGVVLKEDVSIEILPDECLFEIFRRLSGDKERRACAGVSKRWLMLMSNISCHDLISEDEMATKEIEDIEIESDGYLSRSLEGKKATDLTLAAISVGTASRGGLGKLVIRGNYLVSKVTDLGLGAISHRCQSLRVLSLWNLSSIGDEGLCEIAKVSHQLEKLDLCRCPAISDKAVVKIAMSCPKLTDISIESCAKIGNASLRAIGQFCPNLKSIMIKDCPLVGDEGIVSLLSLNTCVMNKVKLQALNVSDVSLAVIGHYGKAVTDAVLTDLKNVSEKGFWVMGNGQGLQNLKSLTISSCNGVTDMGIESIGKGSPNLKHLSLRKCSFLSDKGMVSFAKAVRSLECLQLEECHRITQLGFFGILLNYRKSLKTLSLINCLGIKDMNSELPISASSGSLRSLTIRNCYGFGNRNLALLGKLCPQLQNVDFGGLVGIDECGFLAWLQNCRSSLVKMDVSGCANLTDKVVSSIIERYGSTLEMLNLDGCSNITDASLTSIANNCPLLSDLDVSKCSITDSGIASLARAKQLSLQVFSVAGCSSVSNKCLADLIKLGETLVGLNIQHCNAISGSTVDLLVEKLWRCDILS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1898071 1901312 - Cp4.1LG06g03480.1 Cpe06g00342 471122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00342 637 Gene3D Ribonuclease Inhibitor 246 439 IPR032675 -
Cpe06g00342 637 Gene3D Ribonuclease Inhibitor 132 245 IPR032675 -
Cpe06g00342 637 SUPERFAMILY RNI-like 170 407 - -
Cpe06g00342 637 SUPERFAMILY F-box domain 62 100 IPR036047 GO:0005515
Cpe06g00342 637 PANTHER EIN3-BINDING F-BOX PROTEIN 1 14 628 - -
Cpe06g00342 637 Gene3D - 59 107 - -
Cpe06g00342 637 PANTHER UNCHARACTERIZED 14 628 - -
Cpe06g00342 637 Pfam Leucine Rich repeat 552 574 IPR001611 GO:0005515
Cpe06g00342 637 Pfam Leucine Rich repeat 366 389 IPR001611 GO:0005515
Cpe06g00342 637 Gene3D Ribonuclease Inhibitor 440 637 IPR032675 -
Cpe06g00342 637 SMART fbox_2 67 108 IPR001810 GO:0005515
Cpe06g00342 637 SUPERFAMILY RNI-like 336 598 - -
Cpe06g00342 637 SMART LRR_CC_2 552 576 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 499 524 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 340 365 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 392 417 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 208 233 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 526 551 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 182 207 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 234 259 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 446 471 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 366 391 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 260 285 IPR006553 -
Cpe06g00342 637 SMART LRR_CC_2 472 497 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00342 K14515 EBF1_2; EIN3-binding F-box protein - csv:101207154 1056.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00342 Cpe11g00327 CCT
Cpe02g00452 Cpe06g00342 CCT
Cpe06g00342 Cpe11g00327 ECH
Cpe02g00452 Cpe06g00342 ECH
Cpe06g00342 Cpe07g00296 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00342 Cpe-Chr6:1898071 Cpe07g01103 Cpe-Chr7:9715914 0 dispersed
Cpe11g00327 Cpe-Chr11:1741555 Cpe06g00342 Cpe-Chr6:1898071 0 wgd
Cpe18g00494 Cpe-Chr18:5753249 Cpe06g00342 Cpe-Chr6:1898071 0 wgd
Cpe02g00452 Cpe-Chr2:2555692 Cpe06g00342 Cpe-Chr6:1898071 0 wgd
Cpe06g00342 Cpe-Chr6:1898071 Cpe07g00296 Cpe-Chr7:1932364 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00342 Cpe_Chr06 FPKM 15.879251 17.456856 28.651194 26.161892 37.537506 36.320816 37.780998 23.753668 20.488993 22.09713