Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00343 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTAATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTACAGAAGCCAGCCATGGCCATGGGCACGGATCTTCTCCAATGACCCCAAAAGCACTCTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCTTGACATGCCTGCGGCTCGACAGTGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCAGGCACTCGAGCCACCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGATACCATCCCCGTTGCCATCGCCCGAATCAACGAGCCAGGAACCCGATGCCCATCGGAACGGAATCGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAATTTCAAGCTAA 579 52.33 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSTEASHGHGHGSSPMTPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPLPSPESTSQEPDAHRNGIDEEDRIAMQMIEELLNWNCPLPSISS 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1904800 1905918 + Cp4.1LG06g03420.1 Cpe06g00343 471123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00343 192 MobiDBLite consensus disorder prediction 143 163 - -
Cpe06g00343 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 190 - -
Cpe06g00343 192 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 190 - -
Cpe06g00343 192 MobiDBLite consensus disorder prediction 59 77 - -
Cpe06g00343 192 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cpe06g00343 192 MobiDBLite consensus disorder prediction 59 86 - -
Cpe06g00343 192 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cpe06g00343 192 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00343 Cpe-Chr6:1904800 Cpe11g01069 Cpe-Chr11:8969543 1.20E-71 dispersed
Cpe04g01418 Cpe-Chr4:11395837 Cpe06g00343 Cpe-Chr6:1904800 3.93E-19 transposed
Cpe02g00453 Cpe-Chr2:2565074 Cpe06g00343 Cpe-Chr6:1904800 1.96E-54 wgd
Cpe04g01183 Cpe-Chr4:10052860 Cpe06g00343 Cpe-Chr6:1904800 3.64E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49652 PF00847 AP2 3.90E-13 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00343 - - cmax:111476664 384.415