Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00347 ATGGAAGCAAATGCGGGCCTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATATGAACAGCCAAACATGTCAAATATGTTGTGACACAGTTGGTCTTACGGCCTCTGGTGACGTCTTTGTTGCTTGCAATGAATGTGCGTTTCCCGTTTGTCGTCCGTGTTACGAGTACGAGAGAAAAGACGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGTGTCGATGGTGATGATGATGAAGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAAACAAAACGGCATTGGCAAGGGGAAGATGCTGAACTATCGACCTCTGCAAGACATGAATCTCAACAGCCTATACCACTTCTTACCAATGGCCAATCAGTTTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCGGTGCGAACCACATCTGGTCCTCTGGGTCCTCCAGATAAGCATATGCACTCACATCCATATGTCGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATCTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGACAAAAACATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGACGATGCTAGACAACCTCTGAGTCGTGTCGTTCCTATTCCATCTTCTCACTTGACCCCGTATCGTGTTGTGATCATACTCCGACTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACTCACCCTGTGAAGGATGCATACCCATTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTACCTTGAGAGACTCGCGCTAAGATACGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCACTCAAAGAGCCTCCACTTATCACAGCAAACACTGTGCTTTCCATACTTTCTGTGGACTATCCAGTGGACAAAGTCTCCTGCTATGTATCGGATGACGGTTCAGCAATGCTTACTTTTGAATCCCTCTCTGAAACTGCAGAATTTGCCAGGAAGTGGGTGCCCTTTTGCAAGAAGTTCAATATTGAGCCAAGGGCCCCTGAGTTTTATTTTGCCCAAAAAATTGACTATTTAAAAGACAAGATTCAACCTTCCTTTGTCAAAGAGCGACGATCAATGAAAAGAGAGTATGAAGAATTCAAGGTTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAAAAACGACCAGGCTTCCAGCACCACAAGAAAGCAGGAGCCATGAATGCACTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAAGCCATGTGTTTCATGATGGATCCTGCGTATGGGAAGAAAACATGTTATGTACAATTCCCACAACGTTTCGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAGGGGTTAGATGGCCTCCAGGGTCCGGTCTATGTGGGAACGGGTTGTTGTTTCAATCGACAAGCTTTATATGGTTATGATCCGGTTCTGACCGAGGCAGATTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATAGACAAAAAGAGAGCTGCAAAGAGGACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATCGAGGAAGGCGTTGAAGGTTATGATGATGAGAGGTCGCTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAAGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGTGGGTGGATATCGATTTACTGCATGCCTCCACGCCCGGCGTTCAAGGGATCTGCTCCTATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCATTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTAAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTTTACCCTATCACCTCAATTCCACTGATTGCATACTGTATGCTTCCTGCGTTTTGTCTTTTGACTGGAAAGTTCATCATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCTATCTTTGCAACGGGTATTCTCGAACTCAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACGAACTTCACTGTGACGTCAAAGGCCAACGATGAAGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCGTATGCCATTAACAGTGGCTACCAGTCTTGGGGCCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTCATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTAGGAAGGCAAAACCGTACACCTACCATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCTTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCTGCGACCAAGGCTGCCAATGGTCAATGTGGTGTCAATTGCTAG 3249 45.28 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNMNSQTCQICCDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRHWQGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPDKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETYLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRSMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSAATKAANGQCGVNC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1929692 1935530 - Cp4.1LG06g03510.1 Cpe06g00347 471127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00347 1082 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cpe06g00347 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 1082 - -
Cpe06g00347 1082 SUPERFAMILY RING/U-box 22 111 - -
Cpe06g00347 1082 MobiDBLite consensus disorder prediction 161 193 - -
Cpe06g00347 1082 PANTHER CELLULOSE SYNTHASE 19 1082 - -
Cpe06g00347 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Cpe06g00347 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cpe06g00347 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Cpe06g00347 1082 Coils Coil 456 476 - -
Cpe06g00347 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe06g00347 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cpe06g00347 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cpe06g00347 1082 MobiDBLite consensus disorder prediction 74 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00458 Cpe06g00347 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00347 Cpe-Chr6:1929692 Cpe19g00060 Cpe-Chr19:447906 0 dispersed
Cpe19g00547 Cpe-Chr19:4637473 Cpe06g00347 Cpe-Chr6:1929692 0 dispersed
Cpe12g01174 Cpe-Chr12:9650072 Cpe06g00347 Cpe-Chr6:1929692 0 transposed
Cpe02g00458 Cpe-Chr2:2585423 Cpe06g00347 Cpe-Chr6:1929692 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00347 K10999 - csv:101205724 2183.68