Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00349 ATGCAACTGATGGCTCTTTCAGCGCCGGTGAAGGCACCGGAAGCACTTCTAGGTTCGCCGTCGATTTCTGGCAGGGTTAGCTTCTTCTTTCGCCGGCAGTTTCCATCAAATTTTAGTCTACTGCATCGCCCTCCTGTTCGTCACACTCTATCGCTTACATTAGCTCGCCGTCGGAACCAGAATTCATCAGTCGGTCCGTCTTCATCGTCTTCGAAGAAAAAGAAGAGAAATTCGTTTCCGAAAAAAACTAGGGATGAGGCGGATGAAGAAGAGGATGCTCTTGAGTTGTTGTTTAGTCAACTGGAAGAAGATCTAAAAAATGATAAGCTTACCCTGGATGATGATGATGATGATGATGATGGCGAAGAGGATGAACTTAGCGAAGAGGACCTTGCCAAACTAGAGCGCGAGTTAGGGTTAGCACTTGGCATCGATATTGATGATGAAGAAGAAGAAGAAGAAGAAGAAAACGAAGAAGAAGCAGAAGAAGAAGCAGAAGAAGATCTCGTGGATACCGAAGAAGAGGAAATGCCCGTAAAACTCAAGAACTGGCAACTTCGACGACTAGCCATGGCTTTGAAGAAAGGTCGCCGTAAAACTAGCATCAAGAGTCTTGCTGCTGAGCTTTGTCTTGATAGGGCCGTCGTTCTTGACTTGCTTCGCGAACCACCGCCTCGTCTTCTGATGTTGAGTGCTTCTCTACCGGACCCTCCTACACGATCAATCCCAGAAACTAGAACATTACAAGCTACTCGTGAAGAAGAAGAAGAAGAAGAAGAACCCGTAGAAGTAGTTACTGCAGAAGAGGTGAAGGTGCCTGTTCATGTCATGCAACAGAGCTGGGCTGCTCAAAAGAGGCTGAAAAAGGTTCAGGTTGGAACTCTTGAGAGAGTGTATAGAAGAACAAAGCGACCCACTAACGCAATGATTAGTAGCATTGTCCAAGTGACAAATCTGCCTCGCAAAAGAATAGTGAAATGGTTCGAAGATAAGCGAGGTGAAGACGGGGTTCCTGATCAACGCCTGCCTTATGATCGATCTGCACCTAAATCTGCCTGA 1059 46.27 MQLMALSAPVKAPEALLGSPSISGRVSFFFRRQFPSNFSLLHRPPVRHTLSLTLARRRNQNSSVGPSSSSSKKKKRNSFPKKTRDEADEEEDALELLFSQLEEDLKNDKLTLDDDDDDDDGEEDELSEEDLAKLERELGLALGIDIDDEEEEEEEENEEEAEEEAEEDLVDTEEEEMPVKLKNWQLRRLAMALKKGRRKTSIKSLAAELCLDRAVVLDLLREPPPRLLMLSASLPDPPTRSIPETRTLQATREEEEEEEEPVEVVTAEEVKVPVHVMQQSWAAQKRLKKVQVGTLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKRGEDGVPDQRLPYDRSAPKSA 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1952341 1955264 - Cp4.1LG06g03490.1 Cpe06g00349 471129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00349 352 MobiDBLite consensus disorder prediction 54 91 - -
Cpe06g00349 352 Gene3D - 280 335 - -
Cpe06g00349 352 CDD homeodomain 284 332 IPR001356 GO:0003677
Cpe06g00349 352 Pfam Homeodomain 286 332 IPR001356 GO:0003677
Cpe06g00349 352 Coils Coil 84 104 - -
Cpe06g00349 352 ProSiteProfiles 'Homeobox' domain profile. 278 332 IPR001356 GO:0003677
Cpe06g00349 352 SUPERFAMILY Homeodomain-like 282 337 IPR009057 -
Cpe06g00349 352 PANTHER HOMEOBOX PROTEIN 8 45 347 - -
Cpe06g00349 352 Coils Coil 144 176 - -
Cpe06g00349 352 SMART HOX_1 284 342 IPR001356 GO:0003677
Cpe06g00349 352 MobiDBLite consensus disorder prediction 333 352 - -
Cpe06g00349 352 MobiDBLite consensus disorder prediction 144 174 - -
Cpe06g00349 352 MobiDBLite consensus disorder prediction 54 73 - -
Cpe06g00349 352 MobiDBLite consensus disorder prediction 109 130 - -
Cpe06g00349 352 MobiDBLite consensus disorder prediction 107 176 - -
Cpe06g00349 352 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 45 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00349 - - - cpep:111796839 510.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g456 Blo01g01378 . Bda01g00735 . . Bpe02g00571 . . . . . . Car09g00413 . . . Cpe06g00349 . . . . . . . Cla05g01751 Cam05g1864 Cec05g1876 Cco05g1940 Clacu05g1855 Cmu05g1736 Cre05g1868 Cone4ag1803 Cone7ag1711 . . Lsi04g02145 Csa03g04348 Chy04g00354 . . . . . . . . . . . Cmo09g00477 Cma09g00470 . . . . . Bhi09g02268 . . . . Mch11g0572 . . . . . . . . . . . Cme04g00393
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009857 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 3 1 1 0 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49653 PF00046 Homeodomain 9.00E-06 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00349 Cpe_Chr06 FPKM 8.537089 8.677574 29.930634 33.708527 24.259544 23.436037 25.643089 32.741741 30.54896 31.606476