Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00351 ATGGCTGGGAGATCGATGTGCGGGAGAGAGGATCAGCGAGAGCTTGAGCACTTATCGAGAGACGACGGCAGCCAATACAGCCTCACGGGCGGAATCCTGCCGCCGCTTGGCGTGAATGGGCGAAATAATCGAAGAAGCAAACTCGGTCCTCATATAATCTCGCCGTTCGATTACAATTACAGATTTTGGGAGACGTTTCTGATATTTCTGGTACTCTACACAGCCTGGGCATGTCCGTTTGAGTTTGGGTTTCTCCCTTCGCCCAGCGGAGTTCTGGCAATAATTGACAATGTTGTCAATGGACTTTTCGCCATTGATATAGTTCTGACATTCTTCGTGGCGTATTTGGACAAAACGACTTACCTGCTGGTGGATGACCGGAAGCTGATTGCTCTACGGTATGCCAAAACCTGGTTGGTCCTCGACGTTGTGTCCAATATTCCGTCGGAGATGGCTCGCAATATTCTCCCTCCTTCCCTTCAGGTTTATGGCTACTTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGCTCCATGTTCGCCAGGTTGGAAAAAGACAGGAACTACAACTATTTCTGGGTTCGATCTGCAAAGCTTATGTTTGTGTGTCTGTTCACAGTTCATTTTGCTGGCTGTTGCTTCTATCTAATTGATTCAAACTATAAGGACCCCAAAAGAACATGGTCGACCTTATACATAGAAGACTTCCATAATAAAAGTTTGTGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATTACCACCACTGGCTATGGCGATTTGCATCCAATCAATGATCAAGAGATGTCATTTGTCATTTGTTATCTGTTCTTCATTCTGGGGTTGCAATCTTACCTGATTGGAAATATGACAAACTTGGTCGTCCATGGCACGAGTCGAACCAGGCAATTTAGGGACACCGTTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTGCCTGGTCGGCTGCAAGAACAGATGCTAGCTCATCTGTGTTTGAAATTCAGGATTGATTCAGAGGGTTTACAACAGCAAGAGACAATTGATTCTCTTCCAAAAGCCATTAGATCCGGCATCGCACACCATCTCTTCTATTCACTCGTTGATAGTGCTTATTTGTTCAATGGGGTGTCAACCGACTTGATCTTTCAACTGGTGACAGAAATGAAGGCTGAGTACTTTCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGCACTGCGGATCTTATTGTACAAAGAAATGGAATGGAAGAGATCGTCGGAGAAGCAAAGACAGGAGATGTCATTGGTGAGATTGGCGTGCTTTGTTATCAACCACAACTGTTTACAGTTCGAACCAGCCGTTTGAGTCAACTGTTGCGATTGAATCGCTCTTCGTTTTTCAACTTAGTACAAGCTAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGGTAAAAGACCCAATGATGGAGGAAATTCTGCAAGAAACAGAACAGTCCTTGATTCGTGCTGGAATGGAAATGCCTCTCAATTTATACTTTGCGGCAAGCAGTGGCGATGACTTATTGTTGCATCAGTTGCTAAAGCGTGGTTCAAACCCAAATGAAGTAGATGAGGGTAACGGGAAGACAGCACTTCATATTGCAGCTGCTAAAGGAAACGAACACTGCGTAGTTCTACTCCTAGAGTATGGGGCAGATCCGAATCGAAGAGACTTTGAAGGAAGCCTACCCTTGTGGCAAGCAATACAAGGAAATCATGAGCCTATAGTCAAGCTTCTAATAGACAACGGTGCCGATATTTCTTCAGGAGACGTCGCCCAGTTTGCATGCACCGCTGTGGAGCAAAACAACATAGATATGCTCAAATCCATCATCGAATGTGGTGGAGATGTAACTCTGCCTAGAAGCAACGGGACTACAGCTCTTCACACGGCAGTATGTGAAGGAAACAGTGAAATGGTTAAGTTCCTTTTAGAGCATGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCACGAGCGTTAGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTCTTAAGCAAGCTGTGAATAAATCATCTGTTGTCCATATTCCACAAAATCCCGAATCAAATTATCTACGGAAGTTCCAGAGCGAGTCGATCATACCGCGGTTTTCCCATGACTCCTGCATGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGAGAAGGAGCAATAATTATCGAAATTCGCTAGTCGGGTTCATGGAAAATACCAATAAGGGTGAAAGGGACGTTCTACAATCCGCATTGCTCGGTTTTAGCAATAGCCGAAGCGTGAGATCGGCTTACCAGGCAAGAGTTGTTCTCAGTTGCCCTGAGAAAGGACAAGTTATTGGAAAGCTTGTGCTTTTACCCAAAACCATCCAAGAACTAGTTGAAACTGGTTCCAAAAAATTTGGGGTTTCTGCAACAATGATTTTAACTCATGAAGGAGCTGAAGTTGAGGATATAGACCTTGTCAGAGACGGTGATCACCTCATTCTTGTCGGTGATGCCAGTGCCGCCGTCCCGAGTGGCCAAGTACGGTAG 2655 44.82 MAGRSMCGREDQRELEHLSRDDGSQYSLTGGILPPLGVNGRNNRRSKLGPHIISPFDYNYRFWETFLIFLVLYTAWACPFEFGFLPSPSGVLAIIDNVVNGLFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLVLDVVSNIPSEMARNILPPSLQVYGYFNMLRLWRLRRVSSMFARLEKDRNYNYFWVRSAKLMFVCLFTVHFAGCCFYLIDSNYKDPKRTWSTLYIEDFHNKSLWVRYVTSIYWSIVTITTTGYGDLHPINDQEMSFVICYLFFILGLQSYLIGNMTNLVVHGTSRTRQFRDTVQAASNFAQRNQLPGRLQEQMLAHLCLKFRIDSEGLQQQETIDSLPKAIRSGIAHHLFYSLVDSAYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGTADLIVQRNGMEEIVGEAKTGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEVKDPMMEEILQETEQSLIRAGMEMPLNLYFAASSGDDLLLHQLLKRGSNPNEVDEGNGKTALHIAAAKGNEHCVVLLLEYGADPNRRDFEGSLPLWQAIQGNHEPIVKLLIDNGADISSGDVAQFACTAVEQNNIDMLKSIIECGGDVTLPRSNGTTALHTAVCEGNSEMVKFLLEHGADIDKADVHGWTPRALADHQGHEEIKELFSLKQAVNKSSVVHIPQNPESNYLRKFQSESIIPRFSHDSCMTPVRESNCSDMPPRRRRSNNYRNSLVGFMENTNKGERDVLQSALLGFSNSRSVRSAYQARVVLSCPEKGQVIGKLVLLPKTIQELVETGSKKFGVSATMILTHEGAEVEDIDLVRDGDHLILVGDASAAVPSGQVR 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1959125 1964546 + Cp4.1LG06g03470.1 Cpe06g00351 471131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00351 884 Gene3D - 525 709 IPR036770 -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat region circular profile. 590 621 - -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515
Cpe06g00351 884 Pfam Ankyrin repeats (3 copies) 629 707 IPR002110 GO:0005515
Cpe06g00351 884 Pfam Ankyrin repeats (3 copies) 528 619 IPR002110 GO:0005515
Cpe06g00351 884 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Cpe06g00351 884 CDD CAP_ED 378 481 IPR000595 -
Cpe06g00351 884 Gene3D - 61 299 - -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
Cpe06g00351 884 PANTHER POTASSIUM CHANNEL AKT1 5 875 IPR045319 GO:0005249|GO:0006813
Cpe06g00351 884 SUPERFAMILY Voltage-gated potassium channels 55 299 - -
Cpe06g00351 884 ProSiteProfiles cAMP/cGMP binding motif profile. 378 480 IPR000595 -
Cpe06g00351 884 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00351 884 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00351 884 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00351 884 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00351 884 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00351 884 Gene3D Jelly Rolls 346 516 IPR014710 -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat region circular profile. 654 685 - -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Cpe06g00351 884 SUPERFAMILY Ankyrin repeat 528 707 IPR036770 -
Cpe06g00351 884 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Cpe06g00351 884 SMART ANK_2a 523 552 IPR002110 GO:0005515
Cpe06g00351 884 SMART ANK_2a 590 619 IPR002110 GO:0005515
Cpe06g00351 884 SMART ANK_2a 621 650 IPR002110 GO:0005515
Cpe06g00351 884 SMART ANK_2a 557 586 IPR002110 GO:0005515
Cpe06g00351 884 SMART ANK_2a 654 683 IPR002110 GO:0005515
Cpe06g00351 884 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515
Cpe06g00351 884 PRINTS Ankyrin repeat signature 670 684 IPR002110 GO:0005515
Cpe06g00351 884 ProSiteProfiles KHA domain profile. 808 884 IPR021789 -
Cpe06g00351 884 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 5 875 - -
Cpe06g00351 884 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515
Cpe06g00351 884 SMART cnmp_10 378 495 IPR000595 -
Cpe06g00351 884 Pfam Ion transport protein 61 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe06g00351 884 SUPERFAMILY cAMP-binding domain-like 303 498 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00351 Cpe-Chr6:1959125 Cpe18g00465 Cpe-Chr18:5605324 0 dispersed
Cpe01g02572 Cpe-Chr1:20928916 Cpe06g00351 Cpe-Chr6:1959125 1.40E-10 transposed
Cpe04g01174 Cpe-Chr4:10007142 Cpe06g00351 Cpe-Chr6:1959125 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00351 K21867 - csv:101217334 1365.9