Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00353 ATGGCTTCTTGGTTCAAAAAACATCAGGTGGGAGATTATCTTGAAGGAGTTCCATTCTACAGTCCGAGGAATGAAATTTCTGGACCTGAAAATAGAAACCGAATAGCAGGGATTAAACGAAGTAATCCAGATTCTGCTTTCATGGAGTCATATAGAAACCAAATTCCTCATATTCTACAAAACGGAGCTGGTGGAGATCGACCAAGATACAACGATAATGATGCGGTTTACAGTATGCAGCCACCAAGAATTGCTTCTTCTTCACTCACACAACTTTCTCTTGGCACTAGATCTAACCCTAGCGTTTCCAAATGGGAGAGGCCTATTCCGTTGAACATGAGTTTTGCACCAAATTCTCCACTTGGGAGTCAGTATGTGCCGCGTGTTCATCAAGTAGCTTCCAATTCTTCCAGAGATTTTAATGTTTCTCCTTCCAGTATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGGATGAAAACCCCTGGACTTTTAAGTAGCTTTAATGGTGGACACGATGGGAGGCACTCATATAAGATGTTGCTTGGTTGTGACAAGCAGAAAACCAAGACTGAAGGTTTAGCATACAAATCTTCGAACCCTCCAAGTCAGCAGGGTGTTGATTCTAACAACAGACAGATGACTATTTTCTATGGTGGTCAAGCTCATGTTTTTGACGATGTCCATCCAAACAAGGTAGTTTTCTTATCTCGCAATGGCTTCTTGGTTCAAAATCAGCAGGGTGTTGATTCTAACAACAGACAGATGACTATTTTCTATGGTGGTCAAGCTCATGTTTTTGACGATGTCCATCCAAACAAGGCTGATATTATAATGGCCTTAGCTGGATCAAATGGGGGATCTTGGTCAACAACCTTGGCACCTAAACTGAATGTAACTGGGATATCTAGTGACCAGGAATCAGCTCATGGAAAGTTATTTCATAGTTTGATATCCACCAGTCGAGGAGTTGTCGATATTCCTATCTCGACGCAAGCAGTCGATTATACGACAACAATGGCTTTCGTTCCATCCCCGTCCAACCGTCTCCATTCTCGTGCCTTTTGTTCGCAACAACCGACCAGGATGATCATCATGCAGCAAGAGAGAATTATTCACGTCGATCATAGCGATCGGCAAGTCGCCATTGATGTGATTTGGAGATGTTTATAG 1176 42.6 MASWFKKHQVGDYLEGVPFYSPRNEISGPENRNRIAGIKRSNPDSAFMESYRNQIPHILQNGAGGDRPRYNDNDAVYSMQPPRIASSSLTQLSLGTRSNPSVSKWERPIPLNMSFAPNSPLGSQYVPRVHQVASNSSRDFNVSPSSISQSAADEGSRTGMKTPGLLSSFNGGHDGRHSYKMLLGCDKQKTKTEGLAYKSSNPPSQQGVDSNNRQMTIFYGGQAHVFDDVHPNKVVFLSRNGFLVQNQQGVDSNNRQMTIFYGGQAHVFDDVHPNKADIIMALAGSNGGSWSTTLAPKLNVTGISSDQESAHGKLFHSLISTSRGVVDIPISTQAVDYTTTMAFVPSPSNRLHSRAFCSQQPTRMIIMQQERIIHVDHSDRQVAIDVIWRCL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1966730 1972048 - Cp4.1LG06g03530.1 Cpe06g00353 471133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00353 391 Pfam tify domain 253 284 IPR010399 -
Cpe06g00353 391 Pfam tify domain 211 234 IPR010399 -
Cpe06g00353 391 PANTHER PROTEIN TIFY 8 6 233 - -
Cpe06g00353 391 PANTHER PROTEIN TIFY 8 245 316 - -
Cpe06g00353 391 SMART tify_2 250 285 IPR010399 -
Cpe06g00353 391 SMART tify_2 208 239 IPR010399 -
Cpe06g00353 391 MobiDBLite consensus disorder prediction 136 171 - -
Cpe06g00353 391 MobiDBLite consensus disorder prediction 136 165 - -
Cpe06g00353 391 ProSiteProfiles Tify domain profile. 250 285 IPR010399 -
Cpe06g00353 391 ProSiteProfiles Tify domain profile. 208 243 IPR010399 -
Cpe06g00353 391 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 6 233 IPR040390 -
Cpe06g00353 391 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 245 316 IPR040390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00353 - - - cmos:111443130 548.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00353 Cpe11g00571 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00571 Cpe-Chr11:3390565 Cpe06g00353 Cpe-Chr6:1966730 1.37E-62 wgd
Cpe02g00436 Cpe-Chr2:2453353 Cpe06g00353 Cpe-Chr6:1966730 1.13E-145 wgd
Cpe06g00353 Cpe-Chr6:1966730 Cpe07g00265 Cpe-Chr7:1727277 8.12E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g432 . . . . . . . . Cmo05g00678 . . Cma05g00647 Car09g00417 . . . Cpe06g00353 . . . . . . . Cla05g01757 Cam05g1871 Cec05g1884 Cco05g1947 Clacu05g1863 Cmu05g1744 Cre05g1874 . . . . . Csa03g04357 . . . . . . . . . . . . Cmo09g00481 Cma09g00475 . . . Cpe11g00571 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001357 2 5 2 1 0 2 5 2 2 2 2 2 4 2 2 5 2 2 4 2 2 1 2 2 2 2 1 7 3 1 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49654 PF06200 tify 2.10E-14 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00353 Cpe_Chr06 FPKM 19.80205 21.677946 23.02449 22.814978 21.768257 20.849705 24.052258 24.280273 22.476961 22.740732