Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00368 ATGACGACACCAATGTCCGAAACAAGGTCGCCGTTGCCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTTTTGCCGGCGTTTGGAACTGTTGTGACCGATGGATACTCAAACCTGAACAAGTTCATTATAGTTCCGTATGATAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGATATTGTCTTGACCTTCTTCGTGGCTTATTTGGATAAATCCACTTATCTCCTCGTTGATGATCACAAGAAGATTGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTAATATACAGAATTTTCACTGGAGAGATGAACCGCAATGAGGTCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTGAACTTTTCTCAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTAACAAGACTCATCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGCTGGCAATTCATCATAAAGATGCAGAAAATACATGGATTGGAATTGAAGTAGAAGATTTTAAAAGCAGAAGTATCTGGCTTGGCTACACCTATTCAATATATTGGTCAATTGTCACACTTGCCACCGTTGGTTATGGGGACTTGCATGCAGTTAATCTAGGGGAGAAGATTTTTAGCATCTGCTACATGTTATTCAACATCGGCCTCACGTCTTACTTGATAGGAAACATGACAAATCTTATCGTTCACAGTGCTATCCGAACATTTATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAAGCTTGAAAGATCAAATGTTGGCGCACATGCAGCTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGAACCAGTATTGCCCAGCACCTTTTCCGTCGTACAGTTGAGAATGCATACTTATTCAAGGATCTATCTAACGACTTAATCGCCCAATTGGTGTCTGAGATGAAAGCCGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAATGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCGTGTACAAGACTGGAACTGAACAGACAGTACAAGCAGTGCACATCTTGAATTTCAATAAACCAAGAACTGAAATTTTGTCAAAGCTGGAATCTCCACAGATGGCAGGGGAAATTGCTGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATAAGTCATCATCATTTTAAGCAAATGTTACAACCAAACAACGAAGATGGAAAAACCCTTTTCATCAACTTCACTGAGCACTTGAAGGGGATGAAAAAGGAGGAGCAAAACGAAATACCCTACTTTTCAGAGTTGCTGGAAGACCTAAATTCAGAGTTCACAGAACCGAATGAGACACAAAATCAGAGACTACCAGATTATCATGGAGATCAAAAAATGGAAGGATCGCCAGAAGCATCTACACCATTGCCACATACAGATCGCATCAGGGTGATAATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAAGGGTATGGGAAAACTGGTATTTCTGCCCAAGTCGATTGAAGAACTTTTCGGATTGGCAGGTATTATGATTAGATTTGTGTGA 1866 42.07 MTTPMSETRSPLPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVTDGYSNLNKFIIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKSTYLLVDDHKKIAVRYLTSLWFPMDVASTLPFQVIYRIFTGEMNRNEVFGFLNLLRFWRLRRVSELFSRLEKDIRFSYFLTRLIKLICVTLLAVHSAGCFYYWLAIHHKDAENTWIGIEVEDFKSRSIWLGYTYSIYWSIVTLATVGYGDLHAVNLGEKIFSICYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPESLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRTSIAQHLFRRTVENAYLFKDLSNDLIAQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVIVYKTGTEQTVQAVHILNFNKPRTEILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQMLQPNNEDGKTLFINFTEHLKGMKKEEQNEIPYFSELLEDLNSEFTEPNETQNQRLPDYHGDQKMEGSPEASTPLPHTDRIRVIIHEHHPDESTKDGKGMGKLVFLPKSIEELFGLAGIMIRFV 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2067318 2073968 - Cp4.1LG06g03700.1 Cpe06g00368 471148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00368 621 Pfam Ion transport protein 61 304 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe06g00368 621 Gene3D Jelly Rolls 346 527 IPR014710 -
Cpe06g00368 621 SMART cnmp_10 381 514 IPR000595 -
Cpe06g00368 621 MobiDBLite consensus disorder prediction 545 573 - -
Cpe06g00368 621 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Cpe06g00368 621 SUPERFAMILY cAMP-binding domain-like 310 516 IPR018490 -
Cpe06g00368 621 Pfam Cyclic nucleotide-binding domain 401 500 IPR000595 -
Cpe06g00368 621 PANTHER POTASSIUM CHANNEL AKT1 1 614 IPR045319 GO:0005249|GO:0006813
Cpe06g00368 621 ProSiteProfiles cAMP/cGMP binding motif profile. 381 516 IPR000595 -
Cpe06g00368 621 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 1 614 - -
Cpe06g00368 621 CDD CAP_ED 381 509 IPR000595 -
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe06g00368 621 Gene3D - 63 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00368 Cpe-Chr6:2067318 Cpe18g00465 Cpe-Chr18:5605324 1.01E-166 dispersed
Cpe02g00423 Cpe-Chr2:2340360 Cpe06g00368 Cpe-Chr6:2067318 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00368 K21867 - csv:101215177 1060.83