Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00371 ATGGCTGATGTCCTTCCGTCGTGTCGGTCACCGGCGGCGGACGAGCTGTCGGCGAAAGAAGAGAACGTCGATGGTTCAGCAATGGCAGTTGATTCAGACGTGAATTTTGAAGCCGAGGTTATGAAGTTACGAGGTCAATGGGAGTTGGCATCGGTTTTGAACTTCTTGAATGTTTTCGAGCCGTTAATTGGGAAAAGCTTGAGGATATCGGCTGAAGATATTGAGAAGGGTTTGATAAAGCCCGACAGTTCATTAGCTGAACTCCACATTGTTCTTTTGAAGGGTATCCTACCACCTGTAGGTAAAATGTTAAATGGTTCTAATGCATGGGTGACCGTACTTTGTAAGAAGCTCGCCCAATGGTGGCCTTGGGTTGCTGAAGGGGAAATTCCAATTAAGGCCTTTAAAGGAGAGGAGATATCAAATTACAAGAATCTTGATCCGACAAAACGCTTACTGCTTCTAAAAGCTCTATGTCAAATTCGAGCTGATCAAGATGATGCAGTATCATATATTAGCGACTGCTCGAAAGATAAAACTCAAATATCTTGTTTCCAGAAAGATAAATTTGGAGGAGATGGAAATGGAGTTTCCTATTGGTATGATGGGAATCCATTTGTTGGTTATAGACTATACAGGGAAGTTATCAAATCTGATAGAAAGAAAAAAGGTAAACAAAACGGAAGTGTTTCCCTTCCAAAGTTTAGCACTCGATGGGAAACAATGGCCACAAATCTCGAGGAATTTCATAAAGTTAAAGACAACCTTTTATGCAGCAAGATCAGCAGTGAATTTGCTGTTGGAAGGAAAATTGAATCAGATGCCATTCCCGTTCTTGAGAAACTTCGGAAGAACCAGGAAAGGTCATTGAAACGCAAGCATAGAAAGAGCATGCTCTTGAATGGCTTTAAGAAGCCCTGCGTAGTTGGAGTTACTCGCACTTGTCGGATTCGTGCACCTGTGAACTATACATTTGAGGAGTACAATCGGGCTATTGATGACGCCATAGGGATATCTAGGAGGTTTGTTGTGCAGCCGTTTGTTTGTTCATCAATTGCTTTCAACAGCAGGAACAGTAGGGGCCAATTGCTATCTCAGAACGTGAAAAAAACTGATGAAAAAGAGGAAGGGATGATGCATCACAAGCGCAATAGAACAGATGTTTCTACTAGTGGGAAATCAGTGGATGCCTGTGGAAACAGCGACGAGTGCAGCAATAATGACACTGGAAGCAACACAACCAAAGAAACTGATCTTGACAGCGCTGCTCACATTGATAAGAAGAATTATGAGGACAACGACGACAGAAGCAACGATTTCGATTCTGATAATTTCGATGCAGAAGAGAAGAATGAAATGCTTCAATCCAAAGAGCCTGCAGGAGAAGTGTGCAGTAGGAGGGTGGATACAAGCAGGAAGCATCATGTTAGTAATGAAATTACAAAGGTGGGTGCCAAAAGTAGGCTGAGACAAAGACCAGTTCTTAACTCTGCCCTTGGAAATTGA 1506 42.5 MADVLPSCRSPAADELSAKEENVDGSAMAVDSDVNFEAEVMKLRGQWELASVLNFLNVFEPLIGKSLRISAEDIEKGLIKPDSSLAELHIVLLKGILPPVGKMLNGSNAWVTVLCKKLAQWWPWVAEGEIPIKAFKGEEISNYKNLDPTKRLLLLKALCQIRADQDDAVSYISDCSKDKTQISCFQKDKFGGDGNGVSYWYDGNPFVGYRLYREVIKSDRKKKGKQNGSVSLPKFSTRWETMATNLEEFHKVKDNLLCSKISSEFAVGRKIESDAIPVLEKLRKNQERSLKRKHRKSMLLNGFKKPCVVGVTRTCRIRAPVNYTFEEYNRAIDDAIGISRRFVVQPFVCSSIAFNSRNSRGQLLSQNVKKTDEKEEGMMHHKRNRTDVSTSGKSVDACGNSDECSNNDTGSNTTKETDLDSAAHIDKKNYEDNDDRSNDFDSDNFDAEEKNEMLQSKEPAGEVCSRRVDTSRKHHVSNEITKVGAKSRLRQRPVLNSALGN 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2101530 2107443 + Cp4.1LG06g03610.1 Cpe06g00371 471151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00371 501 PANTHER REMODELING AND SPACING FACTOR 1 38 409 IPR028938 GO:0006355|GO:0031213
Cpe06g00371 501 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 38 409 - -
Cpe06g00371 501 MobiDBLite consensus disorder prediction 390 418 - -
Cpe06g00371 501 MobiDBLite consensus disorder prediction 419 435 - -
Cpe06g00371 501 MobiDBLite consensus disorder prediction 364 489 - -
Cpe06g00371 501 MobiDBLite consensus disorder prediction 367 389 - -
Cpe06g00371 501 MobiDBLite consensus disorder prediction 443 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00371 - - - csv:101214697 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01523 Cpe-Chr4:11986205 Cpe06g00371 Cpe-Chr6:2101530 1.53E-87 dispersed
Cpe06g00371 Cpe-Chr6:2101530 Cpe18g00813 Cpe-Chr18:7567325 2.12E-92 dispersed
Cpe02g00422 Cpe-Chr2:2331604 Cpe06g00371 Cpe-Chr6:2101530 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g394 Blo01g01356 . Bda01g00716 . . . . Bma01g02144 . . Cma01g01543 . Car09g00435 . . . Cpe06g00371 . . . . . . . . . . . . . . . Cone7ag1744 . . Lsi04g02172 Csa03g04378 Chy04g00324 . . . . . . . . . . Cmo01g01593 Cmo09g00497 . . Car01g01172 . . . . . . . . . . . . . . . . . . . . Cme04g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010520 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00371 Cpe_Chr06 FPKM 20.800346 21.686054 15.343917 16.20989 4.017182 4.287831 3.335668 10.870418 10.416291 11.523427