Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00372 ATGGTATTTAGGTTTATTGCGCTTCCTTCTTCGTTACAATCTCTCCTTCATTGCCCTCAATATTCCTTCCCATTTCTTCATCTTCTTCCTGCAACCATGTCCGCTTCATCCGAAACTCCGATCGATGAGCCCCTGTCTGCTGGTGACGAAGCATCTAAAGCTGTCAGCAAGAAGGCCGCCAAGAAGGAGGCTGCCAAGCTGGAAAAGCTGCGCCGTCGCCAGGAAGCAGTCGCCGAAGCTGCTATTTCGTCTCTCAATGTCGAGGACGACCCACTCTCCGCTAACTATGGCGATGTTCCTCTCTCCGATCTCCAATCCAAGGAGGCTAAGGATGTCGCGAACTGGACTCAGGTTGGCTCTTTGACGGGGGAGCTTAAAGACAAGTATGTGATTCTACGGGGACGAATTCAGACGATCCGTGCTGTTGCCAAGAAGATGGCGTTTCTCGTGGTGAGAGAAAAGGGATTCACCGTGCAGTGCGTTGTATCGGAGCAGCCGGAACTCGTCAGTCGCCAGATGGTGAAGTATGTCGTTGGATTGAGCCGTGAATCCATTGTCGACGTTGAAGGAGTTGTGTCTGTGCCCAATGTTGCCATTAAAGGTGCTACGCAGCAGGTGGAGATTCAAGTGAGGAAAGTATACTGCATCAGTAAGGCAATGCCGAGTCTGCCTATAAATATTGAGGATGCTGCTCGTAGTGAAGCTGAGATTGAGAAAGCGTTGCAGGCTGGTGAGCAACTAGTACGTGTTAATCAGGATACGCGGTTGAACTACAGAGTTCTTGACATGCGAACACCAGCTAATCAAGGAATCTTTCGCATTCAATGTCAAATATTTCGACAATTTCTGTTGTCCGAAGGCTTTGTTGAAATCCATACACCAAAATTGATTGGGGGTTCCAGTGAAGGTGGTGCTTCTGTATTTAGGTTGGACTACAAAGGTCAACCGGCTTGCCTGGCTCAGTCACCTCAGCTTCATAAGCAAATGGCAATCTGCGGCGACTTCGGCCGTGTATTTGAGATTGGTCCTGTTTTCAGAGCAGAGGACTCATTCACACATAGACATTTATGTGAATTTACAGGACTTGATGTTGAAATGGAGATCAAAACCCATTATTCTGAGGTCATGGACATCGTAGACCGATTATTTGTCTCAATGTTTGACAGTATGAATCAAAACTGTAAGAAGGAGCTTGAAGCAATTGATAAACAGTATCCCTTTGAGCCTTTGAAGTACTTGCGAAACACTCTACGCCTTACATTTGAGGAAGGAATTCAGATGTTGAAGGATGCTGGCGTTGAAATCGATCCTCTCGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGACGACTCGTCCTAGAGAAGTATGGCACAGAGTTCTACATTCTTCACCGCTATCCTTTGTCTGTTAGGCCATTCTACACTATGCCTTGCCATGATAACCCAACTTACAGTAACTCATTTGATGTCTTTATTCGAGGGGAAGAAATCATTTCTGGGGCTCAGCGTGTTCACGTGCCAGAATTTCTTGCAGAACGCGCTCAAGCATGTGGGATCGATGTAAAAACCATAGAAACTTACATCGATTCGTTTAGGTATGGCGCTCCCCCACACGGTGGATTCGGAGTAGGTTTGGAGCGTGTAGTGATGCTTTTTTGTGGTTTGAATAACATTCGGAAAACATCATTGTTCCCTCGCGACCCACAGAGGATTGCTCCTTAG 1725 46.78 MVFRFIALPSSLQSLLHCPQYSFPFLHLLPATMSASSETPIDEPLSAGDEASKAVSKKAAKKEAAKLEKLRRRQEAVAEAAISSLNVEDDPLSANYGDVPLSDLQSKEAKDVANWTQVGSLTGELKDKYVILRGRIQTIRAVAKKMAFLVVREKGFTVQCVVSEQPELVSRQMVKYVVGLSRESIVDVEGVVSVPNVAIKGATQQVEIQVRKVYCISKAMPSLPINIEDAARSEAEIEKALQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQIFRQFLLSEGFVEIHTPKLIGGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKTHYSEVMDIVDRLFVSMFDSMNQNCKKELEAIDKQYPFEPLKYLRNTLRLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGRLVLEKYGTEFYILHRYPLSVRPFYTMPCHDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2108248 2112422 + Cp4.1LG06g03580.1 Cpe06g00372 471152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00372 574 Coils Coil 57 77 - -
Cpe06g00372 574 PANTHER ASPARTYL-TRNA SYNTHETASE 48 574 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cpe06g00372 574 TIGRFAM aspS_nondisc: aspartate--tRNA(Asn) ligase 124 574 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cpe06g00372 574 SUPERFAMILY Nucleic acid-binding proteins 94 221 IPR012340 -
Cpe06g00372 574 CDD AspRS_cyto_N 129 229 - -
Cpe06g00372 574 CDD AsxRS_core 249 570 - -
Cpe06g00372 574 Gene3D - 88 222 IPR012340 -
Cpe06g00372 574 Pfam tRNA synthetases class II (D, K and N) 252 568 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe06g00372 574 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 277 566 IPR006195 -
Cpe06g00372 574 SUPERFAMILY Class II aaRS and biotin synthetases 247 573 IPR045864 -
Cpe06g00372 574 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 113 574 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cpe06g00372 574 PRINTS Aspartyl-tRNA synthetase signature 319 331 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe06g00372 574 PRINTS Aspartyl-tRNA synthetase signature 489 505 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe06g00372 574 PRINTS Aspartyl-tRNA synthetase signature 529 543 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe06g00372 574 PRINTS Aspartyl-tRNA synthetase signature 336 349 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe06g00372 574 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 48 574 - -
Cpe06g00372 574 Gene3D Bira Bifunctional Protein; Domain 2 224 574 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00372 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 990.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00384 Cpe-Chr1:2211397 Cpe06g00372 Cpe-Chr6:2108248 4.11E-08 dispersed
Cpe06g00372 Cpe-Chr6:2108248 Cpe08g00739 Cpe-Chr8:5850166 6.02E-32 dispersed
Cpe07g00740 Cpe-Chr7:6380838 Cpe06g00372 Cpe-Chr6:2108248 2.14E-06 dispersed
Cpe02g00421 Cpe-Chr2:2326136 Cpe06g00372 Cpe-Chr6:2108248 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00372 Cpe_Chr06 FPKM 9.346017 8.520772 17.364819 17.178831 15.728797 15.704252 19.070066 13.645663 12.3731 14.636292