Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00379 ATGAACACTCTCCGGATCTCTTTCTCGTCGTTTCCGCTGTTGAAAACACTCCCCAATTCTTCCTCACTGAAACCGGCCCAAATCGCCGCAAATTCTGCTCACCGTCGAATCTTTGTCATGAATTCTAGCTCGAAGCTTGATTCTAGGTCGTCTTCGTCGTCGATATGTCAAGTTCCGGGGCTAGAATCGGAGGAGATGGACAGGATTGCGGAACAAATGTTCCGGCGGTATGCGTCTCCTTCTTCTTCGAGTGTTAAGAGAGGAAAAGGAGTCGCCATTGTATGGTTCAGAAATGACCTCCGTGTACTGGACAATGAGGCCCTGTATAAGGCCTGGATTTCGTCAGAGGCTGTGTTGCCGGTGTATTGCGTTGATCCGAGACTTTTTGGTTCTACCTGCTACTTTGGATTTCCTAAAACTGGAGAGGTCTGTTCGTTGCCCGTCGAGTTAGGGCCATGTCTTCTCTTCTTGGACTTAACATTAGTGAGGCGACTTTGGAAGAAATGCATTGCAATGTCGTCATATGATCATAGCAAGTCTTTCAACGATCCTATAATTCCTTCCTTCCTTCCTTCCCTTGCAGCATTGAGAGCTCAATTTATTGTTGAATGCTTGGCTGATTTGAAAAGGAATTTAATAAACCGAGGTCTTAACTTGCTTATTCAACATGGGAAGCCTGAAGAAATTCTCCCTTCTCTTGCTAAAGCTCTTGGTGCCCACACAGTTTATGCTCAAATGGAAACTTGTAGTGAGGAACTATACGTTGAAAGAATGGTAGGCAAAGGACTCAAAACAGTGGTGCTATCACCAACCTCAGAGAAGTCTGCCAAGCCAAGCTCTGCTAGAAGCCCTACTTTGCAACTTGTTTGGGGCACCACGATGTACCACATAGATGACCTTCCATTTGATACCAACAGTTTGCCTGATGTCTACACTCAATTTCGTAAATCTGTTGAAGCTAAATGTCCTATCCGAGATTGCATTAGACTTCCAGCTCTTCTTGGACCTCCAGCAACCATCGATAATTGGGGATGTGTTCCCTCGCTTGATAAGCTTGAGCTTCAACCTCCAAGTGTTGTTAAGGGCATGAGGTTTATTGGGGGTGAGACCGCTGCTCTCTCCAGAATCTATGAGTACTTCTGGAAGAAGGATTTACTACGGATCTACAAGGAAACAAGGAATGGGATGTTAGGACCTGACTACTCTACAAAATTCTCTCCATGGCTTGCTTCAGGAAGCATTTCACCACGTCTCATTCATGAAGAGGTAAAGAGATATGAGAAGGAAAGAGAAGCAAATCAATCTACTTATTGGGTGTTGTTCGAATTGATATGGAGGGATTACTTTCGGTTTCTTTCAGTCAAATATGGGAATTCTCTTTTTCATATAGGTGGCCCAAGAAAAGTGGAGTCGAAATGGAGTCAAGACAAAAATTTGTTTGAATCATGGAGAGATGGCCGTACAGGGTATCCTCTAATAGATGCAAATATGAAAGAATTGTCAACAACTGGGTTCATGTCGAATCGAGGACGGCAGATAGTATGTTCCTTCCTTGTCCGAGATATGGGTATTGATTGGCGTATGGGAGCTGAATGGTTTGAGACATGCCTTCTGGATTATGACCCTTGCTCCAATTATGGAAATTGGACATATGGAGCTGGTGTTGGGAATGACCCTAGAGAAGATCGTTACTTCAGTATCCCCAAGCAAGCACAGACATACGATCCCGAGGGCGAATACGTAGCGTATTGGTTGCCGCAGCTACGAATGTTACCCAAAGATAAGAGGCATTTCCCAGGAAAAATGTTGTACATGGAACAAGTAGTACCTCTGAAGTTTGGGAATGCTGGAAGACCCCAAAGCCAAGATTATGCAAGAAGAAAAAACTTTGGGGGGAGACAAGCAAAGGACTTCAGAAGATAA 1923 44.31 MNTLRISFSSFPLLKTLPNSSSLKPAQIAANSAHRRIFVMNSSSKLDSRSSSSSICQVPGLESEEMDRIAEQMFRRYASPSSSSVKRGKGVAIVWFRNDLRVLDNEALYKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGEVCSLPVELGPCLLFLDLTLVRRLWKKCIAMSSYDHSKSFNDPIIPSFLPSLAALRAQFIVECLADLKRNLINRGLNLLIQHGKPEEILPSLAKALGAHTVYAQMETCSEELYVERMVGKGLKTVVLSPTSEKSAKPSSARSPTLQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAKCPIRDCIRLPALLGPPATIDNWGCVPSLDKLELQPPSVVKGMRFIGGETAALSRIYEYFWKKDLLRIYKETRNGMLGPDYSTKFSPWLASGSISPRLIHEEVKRYEKEREANQSTYWVLFELIWRDYFRFLSVKYGNSLFHIGGPRKVESKWSQDKNLFESWRDGRTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRHFPGKMLYMEQVVPLKFGNAGRPQSQDYARRKNFGGRQAKDFRR 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2160599 2165087 - Cp4.1LG06g04670.1 Cpe06g00379 471159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00379 640 Gene3D HUPs 52 145 IPR014729 -
Cpe06g00379 640 Gene3D HUPs 173 291 IPR014729 -
Cpe06g00379 640 PANTHER CRYPTOCHROME 74 142 IPR002081 -
Cpe06g00379 640 PANTHER CRYPTOCHROME 191 616 IPR002081 -
Cpe06g00379 640 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 362 616 IPR036134 -
Cpe06g00379 640 PANTHER CRYPTOCHROME DASH 191 616 - -
Cpe06g00379 640 Pfam DNA photolyase 193 323 IPR006050 -
Cpe06g00379 640 Pfam DNA photolyase 92 127 IPR006050 -
Cpe06g00379 640 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 90 286 IPR006050 -
Cpe06g00379 640 PANTHER CRYPTOCHROME DASH 74 142 - -
Cpe06g00379 640 Gene3D - 292 461 - -
Cpe06g00379 640 Pfam FAD binding domain of DNA photolyase 441 607 IPR005101 -
Cpe06g00379 640 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 88 341 IPR036155 -
Cpe06g00379 640 MobiDBLite consensus disorder prediction 617 640 - -
Cpe06g00379 640 TIGRFAM crypto_DASH: cryptochrome, DASH family 191 587 IPR014133 GO:0003913|GO:0006281
Cpe06g00379 640 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 462 617 - -
Cpe06g00379 640 PRINTS DNA photolyase signature 488 504 IPR002081 -
Cpe06g00379 640 PRINTS DNA photolyase signature 508 526 IPR002081 -
Cpe06g00379 640 PRINTS DNA photolyase signature 547 561 IPR002081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00379 K25656 cry, CRYD; cryptochrome - csv:101221042 1059.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00374 Cpe06g00379 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00379 Cpe-Chr6:2160599 Cpe17g00782 Cpe-Chr17:6169475 4.83E-53 dispersed
Cpe17g00590 Cpe-Chr17:4885832 Cpe06g00379 Cpe-Chr6:2160599 2.35E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00379 Cpe_Chr06 FPKM 0.429741 0.538027 0.327128 0.281399 1.081977 0.978047 0.887278 0.746125 0.60832 0.578542