Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00385 ATGTTCTCTAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTTTTCTCAGACCAATGACTCTTCTTCGGCGAAGAATCGAGACACGCCGGGCCTGGTTCCGGCAACTGTAAAACAGATAAGCGAAGCTTCCCATTCTGGCGAAGAGAAGGCCAACTTCGCAATCAACGGCGTTGACATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTTATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGACACTTTCGACACCAAGCAAATGGATGAAATACTAGATGGAATGTATATACGGGTGAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGTTATTGGAAAAAGGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTTATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGACACTTTCGACACCAAGCAAATGGATGAAATACTAGATGGAATGTATATACGGGTGAATGGGCATTTGAAAATATTCCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTATTACAAATTTTGATGAAATTACCTTCCACTTTATCGAATGCATACATGAGCACTTGCGGAATTCCAAGTTACAGGTACTGGTTGCTGGAGCTGACTTGATAGCTGCGCTTCTAACTAATCTCAATGGAGTTGGATCGACACAGTTCCTATCCTCGGATTCAATTGTGAAGACTCCAATGCAGAATGGCTCGAGTGGATATCCGACAGCATCTTCAGTACTACCATCTGAGCAGCACACTGTTGATGTTAAGAAGAATTGTGATGACTTGATCCTCGACTATCTTCAGCTGCCCTCCAGCGTTGCCAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAGATTCCAATGGAGAAAATACTTAACTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG 1089 41.41 MFSSSQFDSGSGFTFSQTNDSSSAKNRDTPGLVPATVKQISEASHSGEEKANFAINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEILDGMYIRVNGHLKIFQSNKQIFAFSVSYWKKVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEILDGMYIRVNGHLKIFQSNKQIFAFSVRPITNFDEITFHFIECIHEHLRNSKLQVLVAGADLIAALLTNLNGVGSTQFLSSDSIVKTPMQNGSSGYPTASSVLPSEQHTVDVKKNCDDLILDYLQLPSSVAKERGIHRDELSQQLKIPMEKILNSIRSLEDEGLIYSTIDEFHFKSAA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2178280 2185009 - Cp4.1LG06g04660.1 Cpe06g00385 471165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00385 362 Gene3D - 295 362 IPR036388 -
Cpe06g00385 362 PANTHER REPLICATION PROTEIN A-RELATED 1 134 IPR040260 -
Cpe06g00385 362 PANTHER REPLICATION PROTEIN A-RELATED 139 361 IPR040260 -
Cpe06g00385 362 SUPERFAMILY Winged helix DNA-binding domain 297 360 IPR036390 -
Cpe06g00385 362 Pfam OB-fold nucleic acid binding domain 63 134 IPR004365 GO:0003676
Cpe06g00385 362 Pfam OB-fold nucleic acid binding domain 140 213 IPR004365 GO:0003676
Cpe06g00385 362 MobiDBLite consensus disorder prediction 1 31 - -
Cpe06g00385 362 CDD RPA2_DBD_D 140 232 - -
Cpe06g00385 362 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 134 - -
Cpe06g00385 362 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 139 361 - -
Cpe06g00385 362 Pfam Replication protein A C terminal 269 355 IPR014892 -
Cpe06g00385 362 Gene3D - 29 136 IPR012340 -
Cpe06g00385 362 Gene3D - 137 237 IPR012340 -
Cpe06g00385 362 SUPERFAMILY Nucleic acid-binding proteins 139 235 IPR012340 -
Cpe06g00385 362 SUPERFAMILY Nucleic acid-binding proteins 32 134 IPR012340 -
Cpe06g00385 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00385 K10739 RFA2, RPA2; replication factor A2 - csv:101220176 369.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01306 Cpe-Chr4:10737078 Cpe06g00385 Cpe-Chr6:2178280 7.21E-36 dispersed
Cpe06g00385 Cpe-Chr6:2178280 Cpe18g00624 Cpe-Chr18:6475961 2.16E-33 dispersed
Cpe02g00418 Cpe-Chr2:2313257 Cpe06g00385 Cpe-Chr6:2178280 1.17E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g214 . . . Bda03g00040 . . Bma04g00039 . . . . . Car09g00447 . . . Cpe06g00385 . . . . . . . Cla05g01790 Cam05g1909 Cec05g1920 Cco05g1983 Clacu05g1902 Cmu05g1783 Cre05g1911 . Cone7ag1755 . . Lsi04g02184 Csa03g04392 Chy04g00310 . . . . . . Bpe04g00030 . . Sed05g1650 Cmo01g01597 Cmo09g00511 . . . . . . Bhi09g02337 Tan01g3718 Cmetu04g2121 . Hepe01g2077 Mch11g0615 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009047 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00385 Cpe_Chr06 FPKM 9.194844 7.89161 6.676607 4.554514 6.453033 6.714271 7.165842 9.584341 9.883262 13.304709