Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00386 | ATGGTGATATTTTGTTGCTTTTCTGTCTTACCAAATGTTTGGGTTTTGTTTACGATAACAGAGAAGACACCTGAGGCTAAGGAAGGAACAAAGGGGCACAAGCTTTGGCGATGCCCGATCTGCACTTACGACAATGAAGACAGTTTTACTGCTTGTGATATATGTGGAGTTCTGCGCATCCCTTTGGTCAACGACAGAAATAATCGCGATGATGGAACAGTTGAGAACAATTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTCACCAAATCAGATACCCAAAAGGGAAGTAAAATTTCAAGAGCAGAACGATAAATTTTTGGAGGAGAGAGAAGATAACATCCTCAAGATTGGGAATATCCGGGGCCATTTGCATGAAGTCCATAATGCTTCTAGTACCTATAGTCATGTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAAGGGATTGCGTTCCTCCAAAGTTGATTTAAAAGTCAGCCACAACGACTTCAACTCTTCAATATTATCTTCAGACGTCACTAAGAAGTGTGAAAATAATGAAGTATTGGCTTCAAAAGGTGCACATAGCTCGTCTGCTGTATTGCCGACGGGCAAATTAGGAAGTGTAGGAAATACACAGTTGAGTACCAAAAGTTCAGACAACTGGGGCACAACAATTGGAAAAATTACAGTGGTCACTGAAGAGCACAATACGTCAATTAGTGTAACGAAAAATTCACGATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAATCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAGGTCTTGCCGGTAGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTGCCTTACAAGGTTGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTCTGCACTTATTGGGACGTGTAACCCAGAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTCGCTTATGCCTGGGCACTGGACGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTCGGTGTCGCTTATTTTGACTCTAAAAGATATCATGTAGTTGTACTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTATGGACAGCTCGAAGGGGCAAACAAGAGAACATGTGCAGTTAATCAGGAGCTTTGGCGTAGATCAGATAATTGTTGCCGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTACGACTTCATTAAACTGCAACTTGGAACCTTTTTTCGTTCTTGTGGTTTTAAGGATTCATCGTTGACTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGAATGCCCCTTCTGATGCTCAATTGTTGTCCTGGTATCGTGGACCTAATCTATTGGAGGCAATCGATTCCCTTCAACCACCCGCTAGAGATTTCTCTAAGCCGCTGCTTATGCCGATATGTGATGTAGTTAGATCGCTTTCACTAGGACAAGTGTCTGCCATTGGCAAGCTGGAAGCTGGAGCTCTCAAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGGCACCGTGCGCACTTTAGAATGCAATTCTCAGGCTTGCAAAATTGCAAGAGCGGGAGACAATGTGACTGTTAGTCTACAAGGAGTTGATGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGTCATCCTGATTTTCCTGTTGCTATTGCAAAACATTTGGAATTGAAGATTCTAACCTTGGAACTTGCAACTCCAATATTAATAGGATCTCCGGTGCATATTCTTGGATTCTTTTTCGATACTGATTTTTCCCTTTTATTATTGGGTATTGATCCCCGTTCTTTCAATGAACAGTTGGAAGTTCATATACAACATGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCGTTGCTTGATTCAAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTGTTCTAAGTGCTAAACAGAGTGCAGTGATTGAGGTTATTTTACAAAGCCCAGTTTGTGTCGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGGGCAATGGGCAGAACCATAGCCGTCGGCATTGTGACCCAACTAATTGGAGACCCTGAATGA | 2391 | 42.79 | MVIFCCFSVLPNVWVLFTITEKTPEAKEGTKGHKLWRCPICTYDNEDSFTACDICGVLRIPLVNDRNNRDDGTVENNCKDSGVSKMAKSLFASSPNQIPKREVKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVSKGLRSSKVDLKVSHNDFNSSILSSDVTKKCENNEVLASKGAHSSSAVLPTGKLGSVGNTQLSTKSSDNWGTTIGKITVVTEEHNTSISVTKNSRSRDNRSSSTSTSKSAGKFDSMDESSNPSVEREKPQGLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVTQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKLQLGTFFRSCGFKDSSLTWIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALKSGSKVLIMPSGDKGTVRTLECNSQACKIARAGDNVTVSLQGVDASSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSPVHILGFFFDTDFSLLLLGIDPRSFNEQLEVHIQHVKEAARVARIVSLLDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE | 796 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2186739 | 2192646 | + | Cp4.1LG06g04820.1 | Cpe06g00386 | 471166 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00386 | 796 | MobiDBLite | consensus disorder prediction | 247 | 279 | - | - | |
Cpe06g00386 | 796 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 27 | 61 | IPR001876 | - | |
Cpe06g00386 | 796 | MobiDBLite | consensus disorder prediction | 247 | 291 | - | - | |
Cpe06g00386 | 796 | Gene3D | Translation factors | 706 | 793 | - | - | |
Cpe06g00386 | 796 | Gene3D | - | 331 | 562 | IPR027417 | - | |
Cpe06g00386 | 796 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 707 | 792 | IPR009001 | - | |
Cpe06g00386 | 796 | Pfam | Elongation factor Tu C-terminal domain | 711 | 791 | IPR004160 | - | |
Cpe06g00386 | 796 | MobiDBLite | consensus disorder prediction | 204 | 229 | - | - | |
Cpe06g00386 | 796 | SUPERFAMILY | Ran binding protein zinc finger-like | 32 | 59 | IPR036443 | - | |
Cpe06g00386 | 796 | Pfam | Elongation factor Tu GTP binding domain | 341 | 558 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | ProSitePatterns | Zinc finger RanBP2-type signature. | 36 | 55 | IPR001876 | - | |
Cpe06g00386 | 796 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 338 | 563 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 326 | 572 | IPR027417 | - | |
Cpe06g00386 | 796 | CDD | EF1_alpha | 342 | 561 | - | - | |
Cpe06g00386 | 796 | Pfam | Elongation factor Tu domain 2 | 587 | 651 | IPR004161 | GO:0005525 | |
Cpe06g00386 | 796 | CDD | HBS1_C_III | 656 | 791 | - | - | |
Cpe06g00386 | 796 | PANTHER | OS04G0595300 PROTEIN | 41 | 684 | - | - | |
Cpe06g00386 | 796 | Gene3D | Translation factors | 566 | 655 | - | - | |
Cpe06g00386 | 796 | PRINTS | GTP-binding elongation factor signature | 437 | 448 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | PRINTS | GTP-binding elongation factor signature | 342 | 355 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | PRINTS | GTP-binding elongation factor signature | 401 | 409 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | PRINTS | GTP-binding elongation factor signature | 482 | 491 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | PRINTS | GTP-binding elongation factor signature | 421 | 431 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00386 | 796 | PANTHER | OS04G0595300 PROTEIN | 706 | 794 | - | - | |
Cpe06g00386 | 796 | SUPERFAMILY | Translation proteins | 560 | 655 | IPR009000 | - | |
Cpe06g00386 | 796 | PANTHER | TRANSLATION FACTOR | 706 | 794 | - | - | |
Cpe06g00386 | 796 | PANTHER | TRANSLATION FACTOR | 41 | 684 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00386 | Cpe-Chr6:2186739 | Cpe17g00257 | Cpe-Chr17:1686638 | 2.20E-92 | dispersed | |
Cpe18g00872 | Cpe-Chr18:7971397 | Cpe06g00386 | Cpe-Chr6:2186739 | 5.49E-33 | dispersed | |
Cpe06g00386 | Cpe-Chr6:2186739 | Cpe16g00549 | Cpe-Chr16:6326649 | 2.45E-93 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00386 | K14416 | - | csv:101219939 | 1212.59 |