Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00386 ATGGTGATATTTTGTTGCTTTTCTGTCTTACCAAATGTTTGGGTTTTGTTTACGATAACAGAGAAGACACCTGAGGCTAAGGAAGGAACAAAGGGGCACAAGCTTTGGCGATGCCCGATCTGCACTTACGACAATGAAGACAGTTTTACTGCTTGTGATATATGTGGAGTTCTGCGCATCCCTTTGGTCAACGACAGAAATAATCGCGATGATGGAACAGTTGAGAACAATTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCGTCACCAAATCAGATACCCAAAAGGGAAGTAAAATTTCAAGAGCAGAACGATAAATTTTTGGAGGAGAGAGAAGATAACATCCTCAAGATTGGGAATATCCGGGGCCATTTGCATGAAGTCCATAATGCTTCTAGTACCTATAGTCATGTCCGTACTAATATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAAGGGATTGCGTTCCTCCAAAGTTGATTTAAAAGTCAGCCACAACGACTTCAACTCTTCAATATTATCTTCAGACGTCACTAAGAAGTGTGAAAATAATGAAGTATTGGCTTCAAAAGGTGCACATAGCTCGTCTGCTGTATTGCCGACGGGCAAATTAGGAAGTGTAGGAAATACACAGTTGAGTACCAAAAGTTCAGACAACTGGGGCACAACAATTGGAAAAATTACAGTGGTCACTGAAGAGCACAATACGTCAATTAGTGTAACGAAAAATTCACGATCACGTGATAACAGGTCATCAAGCACTTCCACATCAAAATCAGCAGGCAAATTTGACAGCATGGATGAGAGCAGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAGGTCTTGCCGGTAGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGTGCCTTACAAGGTTGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTCTGCACTTATTGGGACGTGTAACCCAGAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGCAAGGGTTCCTTCGCTTATGCCTGGGCACTGGACGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTCGGTGTCGCTTATTTTGACTCTAAAAGATATCATGTAGTTGTACTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCCGGTATGGACAGCTCGAAGGGGCAAACAAGAGAACATGTGCAGTTAATCAGGAGCTTTGGCGTAGATCAGATAATTGTTGCCGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTACGACTTCATTAAACTGCAACTTGGAACCTTTTTTCGTTCTTGTGGTTTTAAGGATTCATCGTTGACTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGAATGCCCCTTCTGATGCTCAATTGTTGTCCTGGTATCGTGGACCTAATCTATTGGAGGCAATCGATTCCCTTCAACCACCCGCTAGAGATTTCTCTAAGCCGCTGCTTATGCCGATATGTGATGTAGTTAGATCGCTTTCACTAGGACAAGTGTCTGCCATTGGCAAGCTGGAAGCTGGAGCTCTCAAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGGCACCGTGCGCACTTTAGAATGCAATTCTCAGGCTTGCAAAATTGCAAGAGCGGGAGACAATGTGACTGTTAGTCTACAAGGAGTTGATGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGTCATCCTGATTTTCCTGTTGCTATTGCAAAACATTTGGAATTGAAGATTCTAACCTTGGAACTTGCAACTCCAATATTAATAGGATCTCCGGTGCATATTCTTGGATTCTTTTTCGATACTGATTTTTCCCTTTTATTATTGGGTATTGATCCCCGTTCTTTCAATGAACAGTTGGAAGTTCATATACAACATGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCGTTGCTTGATTCAAAGACGGGAAAGGTCACGAAGAAGGCACCGCGTGTTCTAAGTGCTAAACAGAGTGCAGTGATTGAGGTTATTTTACAAAGCCCAGTTTGTGTCGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGGGCAATGGGCAGAACCATAGCCGTCGGCATTGTGACCCAACTAATTGGAGACCCTGAATGA 2391 42.79 MVIFCCFSVLPNVWVLFTITEKTPEAKEGTKGHKLWRCPICTYDNEDSFTACDICGVLRIPLVNDRNNRDDGTVENNCKDSGVSKMAKSLFASSPNQIPKREVKFQEQNDKFLEEREDNILKIGNIRGHLHEVHNASSTYSHVRTNIVPFKFDIPSPDDVVSKGLRSSKVDLKVSHNDFNSSILSSDVTKKCENNEVLASKGAHSSSAVLPTGKLGSVGNTQLSTKSSDNWGTTIGKITVVTEEHNTSISVTKNSRSRDNRSSSTSTSKSAGKFDSMDESSNPSVEREKPQGLAGSLNNMVLNVKSAYANYISGLGKTSNVPYKVDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVTQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKLQLGTFFRSCGFKDSSLTWIPLSAMANQNLVNAPSDAQLLSWYRGPNLLEAIDSLQPPARDFSKPLLMPICDVVRSLSLGQVSAIGKLEAGALKSGSKVLIMPSGDKGTVRTLECNSQACKIARAGDNVTVSLQGVDASSVMAGGVLCHPDFPVAIAKHLELKILTLELATPILIGSPVHILGFFFDTDFSLLLLGIDPRSFNEQLEVHIQHVKEAARVARIVSLLDSKTGKVTKKAPRVLSAKQSAVIEVILQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2186739 2192646 + Cp4.1LG06g04820.1 Cpe06g00386 471166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00386 796 MobiDBLite consensus disorder prediction 247 279 - -
Cpe06g00386 796 ProSiteProfiles Zinc finger RanBP2 type profile. 27 61 IPR001876 -
Cpe06g00386 796 MobiDBLite consensus disorder prediction 247 291 - -
Cpe06g00386 796 Gene3D Translation factors 706 793 - -
Cpe06g00386 796 Gene3D - 331 562 IPR027417 -
Cpe06g00386 796 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 707 792 IPR009001 -
Cpe06g00386 796 Pfam Elongation factor Tu C-terminal domain 711 791 IPR004160 -
Cpe06g00386 796 MobiDBLite consensus disorder prediction 204 229 - -
Cpe06g00386 796 SUPERFAMILY Ran binding protein zinc finger-like 32 59 IPR036443 -
Cpe06g00386 796 Pfam Elongation factor Tu GTP binding domain 341 558 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 ProSitePatterns Zinc finger RanBP2-type signature. 36 55 IPR001876 -
Cpe06g00386 796 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 338 563 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 572 IPR027417 -
Cpe06g00386 796 CDD EF1_alpha 342 561 - -
Cpe06g00386 796 Pfam Elongation factor Tu domain 2 587 651 IPR004161 GO:0005525
Cpe06g00386 796 CDD HBS1_C_III 656 791 - -
Cpe06g00386 796 PANTHER OS04G0595300 PROTEIN 41 684 - -
Cpe06g00386 796 Gene3D Translation factors 566 655 - -
Cpe06g00386 796 PRINTS GTP-binding elongation factor signature 437 448 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 PRINTS GTP-binding elongation factor signature 342 355 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 PRINTS GTP-binding elongation factor signature 401 409 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 PRINTS GTP-binding elongation factor signature 482 491 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 PRINTS GTP-binding elongation factor signature 421 431 IPR000795 GO:0003924|GO:0005525
Cpe06g00386 796 PANTHER OS04G0595300 PROTEIN 706 794 - -
Cpe06g00386 796 SUPERFAMILY Translation proteins 560 655 IPR009000 -
Cpe06g00386 796 PANTHER TRANSLATION FACTOR 706 794 - -
Cpe06g00386 796 PANTHER TRANSLATION FACTOR 41 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00386 Cpe-Chr6:2186739 Cpe17g00257 Cpe-Chr17:1686638 2.20E-92 dispersed
Cpe18g00872 Cpe-Chr18:7971397 Cpe06g00386 Cpe-Chr6:2186739 5.49E-33 dispersed
Cpe06g00386 Cpe-Chr6:2186739 Cpe16g00549 Cpe-Chr16:6326649 2.45E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00386 K14416 - csv:101219939 1212.59