Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00387 ATGACGGGGCTAACATGTAATGCTTGTAACAAAGAATTTCTAGACGCCGAGGAGCAAAAGCTTCACTACAAGTCCGAATGGCATCGATACAATCTTAAGCGCAAGGTAGCTAATGTTCCTGGGGTGACAGAGGCATTATTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTCGATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCGCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACACTATCCGGGTTTCGCAAGGAACACATGATCAAGAAGTTGAAAAACCAATAATTAAGCCCCTTCCTCAGCGGATTTCCAATAAGGAACCCCAACAGAGTGAGGAGGAAGAGAGTGAGGAGGAAGAGAGTGAGGAGGAAGAGAGTGAGGAGGAGGAGTGGGAAGAAGTTAATCCTGACGAAGACATGATCGATGAGGGTGAGGATGAGGACGATGATGATATTGATGCCATTGAAGTGGACTTCGATCCATCATGCTGCTTCATGTGTGATCTAAAGCACGACACCATTGATAATTGCATGGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGATGTTGAATATTTGAAGGATCCGAAAGGCTTCCTTACATACCTCGGTCTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAGCGATAATCGTCTTCCTTTTAGCTGCTTGGAAGCTGTTAGGAAGCACATGGAAGCAAAAAGCCATTGCAAAGTGCATTATGGCGATGGAGACGAGAACGAAGAAGTAGAATTGGAGGAATTTTATGATTACAGCAGCAGTTATGTGGATGGAAGCAACCAGCTGGTACCATCAGGGGCTGGGGACAATTCTGTTGAACTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAAGAACTAACGACCGACAATCGACCAAAACACTTGGTTCCAGACAATTCCTTCGTTATTATCGTCAAAAGCCACGACCGTCTCCTGCAAATGATGCGCTCTTAACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACTGTCCAGTCAAGAGAAACGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACTGGGTTGGAAGCTATGCGTACCAAGATCGGATTGAAGAACAATGTAATCCGAAATCTGCCAAAGAATGTACCACACTAG 1215 44.94 MTGLTCNACNKEFLDAEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETSMLYSCGLCSKAYRSAQAHAQHLKSRSHTIRVSQGTHDQEVEKPIIKPLPQRISNKEPQQSEEEESEEEESEEEESEEEEWEEVNPDEDMIDEGEDEDDDDIDAIEVDFDPSCCFMCDLKHDTIDNCMVHMHKQHGFFIPDVEYLKDPKGFLTYLGLKVMRDFRCLYCSDNRLPFSCLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSNQLVPSGAGDNSVELGSGGAELILVQRTNDRQSTKTLGSRQFLRYYRQKPRPSPANDALLTAVLAARYRSMGLATVQSRETMIRMKVMKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPH 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2192998 2195704 - Cp4.1LG06g04590.1 Cpe06g00387 471167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00387 404 SMART c2h2final6 177 200 IPR013087 -
Cpe06g00387 404 SMART c2h2final6 228 255 IPR013087 -
Cpe06g00387 404 SMART c2h2final6 4 28 IPR013087 -
Cpe06g00387 404 SMART c2h2final6 69 93 IPR013087 -
Cpe06g00387 404 PANTHER ZINC FINGER PROTEIN-RELATED 1 403 - -
Cpe06g00387 404 Pfam C2H2 type zinc-finger (2 copies) 179 280 IPR041661 -
Cpe06g00387 404 SUPERFAMILY beta-beta-alpha zinc fingers 162 215 IPR036236 -
Cpe06g00387 404 MobiDBLite consensus disorder prediction 96 110 - -
Cpe06g00387 404 PANTHER ZINC FINGER PROTEIN 622 1 403 IPR040025 -
Cpe06g00387 404 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Cpe06g00387 404 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Cpe06g00387 404 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cpe06g00387 404 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676|GO:0008270
Cpe06g00387 404 MobiDBLite consensus disorder prediction 85 162 - -
Cpe06g00387 404 Coils Coil 124 149 - -
Cpe06g00387 404 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cpe06g00387 404 MobiDBLite consensus disorder prediction 126 162 - -
Cpe06g00387 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 94 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00871 Cpe-Chr6:5697518 Cpe06g00387 Cpe-Chr6:2192998 6.41E-06 transposed
Cpe02g00419 Cpe-Chr2:2318966 Cpe06g00387 Cpe-Chr6:2192998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00387 K14816 - csv:101219700 659.448