Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00388 ATGCACCGGAGAATAATCTACGCCTTCCAAGTTCTTCAATCTGTGAGAATTAGTCCAAGCCGTGTGTGTACTTATTTCTTCTATTATCTGTTCTCTCGCCGTAAAGTCGATCTCAAAAATTCTCCCTCCATGGCTTCAATGGCGGCGTGGTTGATCGGAATAATAATCGTACTCTGCCAAGTCTCCACGCCATTGGCGCAGGGCGGCGGCGGAAATCCAATGTCCATCGTAATCGCTTTCTCGGTGGTTGGCTCTGTGGTTGGATTGCTCATTCTCGTGGCGATTGGCATATTCTCTTACAAATTTGCCAAGAAAGTTGTAAAAGAATGGAGAAACACATCGATTTCACCGCCGGATCCGGAATCGGCGCCGGTAGAGATTTTGGAAAAAGATGCACCGGAAATGGATAAATTCCTCCGAGAAATCGCCGACGAATATCCGATTAGATTCACCGCTCAGCAACTCAACGTCTTCACGAACAACTACGCAACGCGGCTAGGATCCGGCGGCTTCGGTGATGTTTACAAAGGCCAGTTCCCTAACGGATTGAAGATCGCAGTGAAGATTCTCAAGAGAAACTCCGACAAAAAAGCTGAAAATCAATTCATGGCGGAAATCGGAACAATCGGCAGAACGCGGCATCGAAATCTTCTCAGGATGTACGGATTCTGTTACGACGAATTCATGAGCGCGCTGGTTTTGGAGTACATGGAGAACGGATCGCTCGACAGATTCTTGTACGGAAAAACCAGGAACGAAATCGATTGGGAGAAATTGCAGGAAATCGCGATCGGAACCGCTAGAGGAATCGCGTATTTGCATGAAGAATGCCATAGAAGAATCATCCATTACGACATCAAGCCTGCAAACATTCTATTAGATGCGGATTTCTCACCGAAAATCGGCGATTTCGGACTTGCGAATCTCTGCAACAAAGACAACACACACGTATCTCTCACAGAATATCGAGGAACTCCGGGATATTCGGCACCGGAGCTCTTGAGATTCAATTTTCCGGCGACTTTCAAGTGCGATGTATACAGTTTTGGAATGGTACTGTTTGAGATGGTCGGAAGGAGGAAGAACGCCGTAGTCGGTTCGTCGGGGAGCATCGATTGGTTTCCGATTCAGATATGGGAGCAGTTCGACAAGGGCGAGTTAGTGAATATGAGCGGTGAATGTAATGTTGAAGAGGATGGAGAGAGGAAAATGGCGATTGAGAGAATGTGTATGGTGGCTCTCTGGTGCGTACAGGACACGCCGGAGGCTCGACCTCCAATGTCGACGGTGGTAAAGATGTTGGAAGGGAGCGCTGAAATAACACCGCCGCCGAAGCCGTTTCAATATATGTATCCAATTTCCACAGATACAAGCGCCGTCACCGCCGTCACCACCGCCACCGTCGCCATGGATTCCGAGCAAATGAGCTCTGGTTCGACTCCGAGTCCGATTTGGTACAAGGGCTCTGTCCCTATTTTGAGAACTTGA 1488 48.32 MHRRIIYAFQVLQSVRISPSRVCTYFFYYLFSRRKVDLKNSPSMASMAAWLIGIIIVLCQVSTPLAQGGGGNPMSIVIAFSVVGSVVGLLILVAIGIFSYKFAKKVVKEWRNTSISPPDPESAPVEILEKDAPEMDKFLREIADEYPIRFTAQQLNVFTNNYATRLGSGGFGDVYKGQFPNGLKIAVKILKRNSDKKAENQFMAEIGTIGRTRHRNLLRMYGFCYDEFMSALVLEYMENGSLDRFLYGKTRNEIDWEKLQEIAIGTARGIAYLHEECHRRIIHYDIKPANILLDADFSPKIGDFGLANLCNKDNTHVSLTEYRGTPGYSAPELLRFNFPATFKCDVYSFGMVLFEMVGRRKNAVVGSSGSIDWFPIQIWEQFDKGELVNMSGECNVEEDGERKMAIERMCMVALWCVQDTPEARPPMSTVVKMLEGSAEITPPPKPFQYMYPISTDTSAVTAVTTATVAMDSEQMSSGSTPSPIWYKGSVPILRT 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2196627 2198321 + Cp4.1LG06g04790.1 Cpe06g00388 471168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00388 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Cpe06g00388 495 PANTHER RECEPTOR SERINE/THREONINE KINASE 126 459 - -
Cpe06g00388 495 PANTHER RUST RESISTANCE KINASE LR10-RELATED 126 459 IPR045874 GO:0004672
Cpe06g00388 495 SMART serkin_6 160 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00388 495 Gene3D Phosphorylase Kinase; domain 1 135 236 - -
Cpe06g00388 495 CDD STKc_IRAK 166 436 - -
Cpe06g00388 495 Pfam Protein kinase domain 164 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00388 495 SUPERFAMILY Protein kinase-like (PK-like) 150 474 IPR011009 -
Cpe06g00388 495 ProSitePatterns Protein kinases ATP-binding region signature. 166 188 IPR017441 GO:0005524
Cpe06g00388 495 ProSiteProfiles Protein kinase domain profile. 160 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00388 495 Gene3D Transferase(Phosphotransferase) domain 1 237 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00388 - - - mcha:111008185 692.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00408 Cpe-Chr2:2273829 Cpe06g00388 Cpe-Chr6:2196627 2.18E-20 dispersed
Cpe06g00388 Cpe-Chr6:2196627 Cpe13g00715 Cpe-Chr13:6620524 9.88E-76 dispersed
Cpe02g00407 Cpe-Chr2:2270025 Cpe06g00388 Cpe-Chr6:2196627 1.29E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g210 . . . . Bpe02g01248 . . . . . . . Car09g00450 . . . Cpe06g00388 . . . . . . . Cla05g01795 . . . . . . . . . . Lsi04g02188 Csa03g04396 Chy04g00306 . . . Bda01g01002 . . . . . . . Cmo09g00514 . . . . . . Bhi09g02350 . . . Hepe01g2080 Mch11g0619 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000610 0 8 0 0 0 4 2 4 5 4 3 4 3 4 3 3 4 2 3 1 4 2 3 5 5 3 5 7 7 4 102
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62465 PF00069 Pkinase 7.90E-47 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00388 Cpe_Chr06 FPKM 7.524341 7.918064 9.208924 8.058443 6.265369 6.384142 6.299734 7.532322 7.228539 7.148408