Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00394 ATGGCGGTCGATCTAGTGAGTTTTCCTAAGATTGATGATCAGATGGTTATACAGGAAGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCGCACAAGAAAACTTCAAACCATGGCGATTGCTCTGACCTAACCGATGCAACTGTTCTGAAGCTTAAGAAAGCGATCTCTCTCCTTAATCGGACTGGTCACGCTAGGTTCCGGCGAGGTCCGGTTTCTTTCGCCTTCTCATCGCCGATATCTGGTTCATTTCCTCATCTCTCTGTTCCTCAAGATCAGACGATGAATCTCGCTCCTTCTCTGTTTACTTCGTCGGTAACGATTTCTGCTCCGCCGCAGGCGAATGTCGTCTCTGCAGCGGCGAACTTGCCTCAGTCGCAGCCTCAGAGTTTGACTCTTGATTTCACCAGGCCGAATATTCTGAACCCTAACCCTAAGGGAACCGATGAATTTTCTAAGGAAACCTTCAGCGTCTCTTCCAGTTCCTCTTTGAAGTCCTCTGCCATTACCGGCGACGGAAGTGTATCCAACGGAAAAGTAGGAACGGCCGTGTTTTTGGCACCGGCGCCGACTGCTTCCGGTGGAAAACTGCCGCTCTCTGCGGAGGCGTGCAAGAAGAAGTGTCACGAACAAGATCATTCCGAAGATTTGTCCGGGATAATCTCTGGATCGAAATCTGGTTCCTGCAAGTGCCATTGCTCAAAGAGAAGAAAAAATCGTATGAAGAAGACGATTCAAATCCCGGCTATTAGTTCGAAAATCGCCGACATTCCAACGGACGAGTTCTCGTGGAGGAAATACGGTCAGAAGCCGATCAAGGGATCTCCATACCCGCGAGCATATTATAAGTGTAGCACGATGAGGGGATGTCCGGCAAGGAAGCACGTGGAGAGAAATCCGAAGGATCCGGCGATGTTGATTATTACGTATGAAGGGGAGCACCGCCATACGCCGAGCTCGTTGCTGGAAAATAGGGCCGCCGGAGTGTCTTTAGCTTTGGACTCAACTTGA 1026 49.61 MAVDLVSFPKIDDQMVIQEAASQGLKSMEHLIRLLSHKKTSNHGDCSDLTDATVLKLKKAISLLNRTGHARFRRGPVSFAFSSPISGSFPHLSVPQDQTMNLAPSLFTSSVTISAPPQANVVSAAANLPQSQPQSLTLDFTRPNILNPNPKGTDEFSKETFSVSSSSSLKSSAITGDGSVSNGKVGTAVFLAPAPTASGGKLPLSAEACKKKCHEQDHSEDLSGIISGSKSGSCKCHCSKRRKNRMKKTIQIPAISSKIADIPTDEFSWRKYGQKPIKGSPYPRAYYKCSTMRGCPARKHVERNPKDPAMLIITYEGEHRHTPSSLLENRAAGVSLALDST 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2231470 2233236 - Cp4.1LG06g04620.1 Cpe06g00394 471174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00394 341 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe06g00394 341 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 331 IPR044810 GO:0003700
Cpe06g00394 341 Pfam WRKY DNA -binding domain 265 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe06g00394 341 Pfam Plant zinc cluster domain 210 261 IPR018872 -
Cpe06g00394 341 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 9 331 - -
Cpe06g00394 341 SUPERFAMILY WRKY DNA-binding domain 261 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe06g00394 341 Gene3D WRKY domain 247 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe06g00394 341 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00287 Cpe06g00394 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01336 Cpe-Chr4:10951905 Cpe06g00394 Cpe-Chr6:2231470 2.46E-88 dispersed
Cpe06g00394 Cpe-Chr6:2231470 Cpe16g00152 Cpe-Chr16:3550772 1.02E-61 dispersed
Cpe02g00398 Cpe-Chr2:2230984 Cpe06g00394 Cpe-Chr6:2231470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49655 PF03106 WRKY 1.00E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00394 - - bhj:120087087 495.352