Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00399 ATGGCTCCTAGATTGGGGTTTCTGTGTCGGTGGGGAAAAGAGAAAGATCCTCAAAAAGGAACTCCGGTTGTTGTGACGATGGAGAAGCCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATACCAAGCAGGTCACGTGGATTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAGCTTGGCTTGTTACAGTTCTCTGGACATTGTTGGGAACAATCAAGAAGAGGCTGATCTACCGGCAAGGAATCGCCATTGAAGGCGGGAAGCTGGGAAGAGGGAGGTTACTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATTGGGATTCTTGCTTTTGAAATGCTTGCTTATTTCAAAGGCTGGCATTATTTTCAGCATTCTAATCTGCATATTCCTCAGGCTTCTGAGTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTGTAGAGCAGAGTACATTGCTCCTCTCATTCAAACACTCTCTAAATTTTGCATCGTTCTGTTCCTTATCCAATCGGTGGATCGTATGATCCTTTGTTTTGGTTGCCTATGGATAAAGTACAAGAGAATTGAACCCAAGATTGAAGGGGATCCCTTCAGGTCGGATGATGTGGAGGGAGGTGGATACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAACGGGAGGTTTACGAGCAGTCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTACTCATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAGGCTGAGGTTGCTAAATGGAGCCATAAGGGGGTGAACATAGTCTATCGCCATCGATTAGTAAGAACGGGATATAAAGCTGGGAATTTGAAATCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTTGCAATTTTCGACGCCGACTTTCAACCTAACCCGGATTTTCTTAAGCTGACCGTCCCCCATTTCAAGGATAACCCAGAGCTAGGTTTGGTCCAGGCCAGATGGTCGTTTGTGAACCGGGACGAAAACTTGTTGACACGCCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTCAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACAGCTGGTGTTTGGAGGATTAAGGCGCTCGAGGAGTCCGGAGGGTGGCTTGAAAGAACGACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTCGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTCCCTTCCAGCAGTCATAAGTTCTAAGATATCAGCATGGAAGAAGGCAAATTTGATACTATTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACGTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTACGTGCCCGTCTTCATGTCGTTACTCAACATTCTTCCATCCCCCAAATCATTTCCTTTTATTGTCCCCTACCTTCTTTTTGAAAACACCATGTCCGTAACCAAATTCAATGCCATGGTGTCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAGGCTGGCAGATCCTCCGAATCCGACTTACTGGCTGCTGCCGAAAGGGACTCTAAGATAACGAATCAAGCGCAGATATATAGAGGCGCTTCTGAGAGCGAGATTTCTGAGTTGACCCACTTAAAAGAACGCAAAGAAGTCGTCTCTGCACCTGTCAAAAAAGTAAACAAGTTATATCGAAAAGAGCTAGCGCTCGCGTTTCTTTTACTCTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGTCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 44.59 MAPRLGFLCRWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNTKQVTWILLLKANRAVGCIAWLVTVLWTLLGTIKKRLIYRQGIAIEGGKLGRGRLLFGVIRVFLVTSIGILAFEMLAYFKGWHYFQHSNLHIPQASELQGLLHSLYVAWLTCRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRSDDVEGGGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSHKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNRDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLSLPAVISSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKITNQAQIYRGASESEISELTHLKERKEVVSAPVKKVNKLYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2254365 2258794 - Cp4.1LG06g04610.1 Cpe06g00399 471179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00399 695 PANTHER - 13 695 - -
Cpe06g00399 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 530 IPR029044 -
Cpe06g00399 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 225 449 IPR029044 -
Cpe06g00399 695 Pfam Glycosyl transferase family group 2 324 528 IPR001173 -
Cpe06g00399 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00399 - - - csv:101217415 1304.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02362 Cpe-Chr1:19755635 Cpe06g00399 Cpe-Chr6:2254365 0 dispersed
Cpe06g00399 Cpe-Chr6:2254365 Cpe13g00918 Cpe-Chr13:7791640 0 dispersed
Cpe19g00450 Cpe-Chr19:3992568 Cpe06g00399 Cpe-Chr6:2254365 2.71E-44 dispersed
Cpe02g00395 Cpe-Chr2:2196292 Cpe06g00399 Cpe-Chr6:2254365 2.57E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe06g00399 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.1
Cpe13g00918 CCT 6 665 REM Transcription Factor Family AT2G24630 68.6 1.1e-266 916.4
Cpe01g02362 CCT 4 662 REM Transcription Factor Family AT2G24630 69.1 9.2e-266 913.3
Cpe02g00395 . 1 598 REM Transcription Factor Family AT2G24630 64.8 9.3e-250 860.1
Cpe02g00240 CCT 1 636 REM Transcription Factor Family AT2G24630 55.7 1.3e-214 743.4
Cpe06g00220 CCT,CST 1 611 REM Transcription Factor Family AT2G24630 52.5 9.1e-197 684.1
Cpe07g00533 CCT,CST 5 603 REM Transcription Factor Family AT2G24630 52.7 2.2e-190 662.9
Cpe13g00780 . 37 175 REM Transcription Factor Family AT2G24630 56.8 1.2e-39 162.2
Cpe05g01232 . 220 380 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Cpe16g00215 . 265 427 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00399 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0