Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00414 ATGCTTGATGAATGTCGCGCGGGTTTCTGTATTTTATGTGCTGAAAGAAACACTCGGTCGGTGGATTTTGGAGTTCTGAATTTCTCCATTCGAGGAATTGAAGTTTTGAAATATCGATTTTACCTTCGCTTGCACATCGGATTTCTGTTTACTCAAGTGAAATTAGTTTCTCTTGATTTCAGGGAAGCAATTGCTGGAAAGTGCAACGTTATCTGCGTTTCAGATGACAGCAGAAATCCACGACCTTCAGATGAAGAACTCGAAAAGGCTGATTTTGTATTTTTTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAATGAGATGTGTGCAAAAATTGCTGGAGTAGAAGTTAAATTTTTGCTTAATAGATTAGATACGTCAAAAGATGTTACGAGGACCGATACGGATGGGAAAGATGCAAGTGTCATTGCAATTGTAGATACTGAATCAGAAGATCCTTCTGGACGTAATACTTCCAATGGGGAACTAACTTTGAAGACTACTGAAAACTCTTTCAAGAAGTCCACAAAGGAAAATGTTGAGTTGGAGGAGCCTATTGAGAAATCCTCCAATGGAGAGAGGTCTGGAGTATGTGTGATTGATGGGGGAAATGGAATGGCTAGAACTAGTAGTAAACAAGAAAACATCTTAGATGATAAGGTATCTCCGAAGCCTGAAATTGATTCTAATGAGATACACCGTAAAGGTGTTGAAGCTCGAGCTAAGGATGTTGACGGTAGAGTTAAAAGCCCCAGGGCCTCTGCTGAAGATGAACATAGGTCAGCAAAGAAGGCAAAACTAGATAGTTCTGTTCAATTATCTCATGGAAAGACCAAGAGTGACATTGAAAGGCTTGCCCTCAATTGCAAAAATGGCGATACACTGGCTTCCCCACCTAAGGTTCTTGTTTCTGAAACCAAAGATTATCATGAAACCAAAGATAGCCTTATAAAGAAGCCCAAACTAGATGAGAAGCCAACAAAGGTTTCTAATGGCAAGAACCTAAAGGCCTCTTCCCAAATATCTTCAGTTACAGACTGCAAAATAGATGGTGAAATTGTGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTGCCGTGGGAAGAAAGAATAAAAGATGCATATGAGCAAGGAACACTTGTTCTAATTCAGAATTTGGATCCTGCTTACACTTCAGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAACGAGAGTTGCACAGCTAAGATGATTCAGCGTACTGCAATTTCTATGCCTCACATAGGTCAAGCTCATGTTGTATTCAAAACTAAGGAAGCAGCAGATAAAGTGGTTAGAAAATTAGATGAAGGTTGCTTATTACTTGCAAATGGGAGAGCTCTTGTTGGTAGCTTTGCAATTCCTCAACTTCCGTCAAAGAAACAAATTTTTTTTGGGCATCACAGTATTGATAAGCTTAGACATCTAATGCAACGTGAGATGAAAGAAGCTGTATCAACTTCGCATTGTTCTCAGCCGAACACAGTAGAATACGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAACGCGCCTGCAGAAAGTTGTTTAAGCAACAAGAAGAGGAGTTAAGAGAACTCAAGGGCAAGCTGAAATCTAGATGA 1653 40.23 MLDECRAGFCILCAERNTRSVDFGVLNFSIRGIEVLKYRFYLRLHIGFLFTQVKLVSLDFREAIAGKCNVICVSDDSRNPRPSDEELEKADFVFFRTFDVGKQEVCNEMCAKIAGVEVKFLLNRLDTSKDVTRTDTDGKDASVIAIVDTESEDPSGRNTSNGELTLKTTENSFKKSTKENVELEEPIEKSSNGERSGVCVIDGGNGMARTSSKQENILDDKVSPKPEIDSNEIHRKGVEARAKDVDGRVKSPRASAEDEHRSAKKAKLDSSVQLSHGKTKSDIERLALNCKNGDTLASPPKVLVSETKDYHETKDSLIKKPKLDEKPTKVSNGKNLKASSQISSVTDCKIDGEIVEVTRRPDADRSRWFKGLPWEERIKDAYEQGTLVLIQNLDPAYTSGEVEDIVWHAFNESCTAKMIQRTAISMPHIGQAHVVFKTKEAADKVVRKLDEGCLLLANGRALVGSFAIPQLPSKKQIFFGHHSIDKLRHLMQREMKEAVSTSHCSQPNTVEYDMAMEWCLLQERSERACRKLFKQQEEELRELKGKLKSR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2362533 2369082 - Cp4.1LG06g04480.1 Cpe06g00414 471194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00414 550 PANTHER PROTEIN ANTI-SILENCING 1 62 549 - -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 242 267 - -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 314 337 - -
Cpe06g00414 550 Coils Coil 533 550 - -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 242 279 - -
Cpe06g00414 550 Gene3D - 374 470 IPR012677 -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 152 171 - -
Cpe06g00414 550 SUPERFAMILY RNA-binding domain, RBD 378 470 IPR035979 GO:0003676
Cpe06g00414 550 MobiDBLite consensus disorder prediction 172 191 - -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 314 331 - -
Cpe06g00414 550 MobiDBLite consensus disorder prediction 149 197 - -
Cpe06g00414 550 PANTHER PROTEIN ANTI-SILENCING 1 62 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00414 - - - mcha:111007160 701.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00384 Cpe06g00414 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00384 Cpe-Chr2:2116826 Cpe06g00414 Cpe-Chr6:2362533 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00414 Cpe_Chr06 FPKM 12.184123 12.809343 9.146433 10.845174 5.766711 5.491757 5.78024 2.021908 1.65865 1.894743