Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00417 ATGGCGGTAGCGCGAAACAGGGTTCTGGCATTGGCCAAAGGCGGTTCCTCCAGGATTCCGCTACGGTTTCAGGAAGCTCATTATCGATGTATTTGCCGGAGATTCGTTTCTACTGATCCGTCGAATTCGATTTTGAATCCTCAGGTTCTCAGGTTGATTCAGGAGCCAAGTTCGTCTGTGAAATCCGTGCTTGATTCGCCGGAAAATGCTTTTCTCGGCAACTCGCGACTTTCCTGGAAAGCTCTTGTTACGTCTCTTATATCTTCTTCGTCGCCTAAGAAGGCTCAGCTGGCTTTGGAATGGAGATTGGAGAAAATGAGCAAAGAAAACGAGAGGGATCCCGACTTTTACATCGACCTAATACCCAAAAGAGCGTTTGAATTCTCTGCTGATCTTCGAACCTATGAAGCTCTTATACATGGTAGTGTGAAATCAAAGTGCTTTGACTTTGCTGTTAGATGTTTTGATGAAATGATGTTATCTGGCATTGTGCCCAACGCAATCATATTGGATAATATGCTTGAAGGGTTCTGTAAAAGGAAAGATTTGGATGAACTCAAGAAGTTCTTAACTGTTGTGCTTGACAAAGGATGGGAAATCAATTGGAATGTGGTAGAGAAATTCATTCCGATATGGTTTGAATCTGGGGAGGCGGAAGGGATGGAGGAGATCCTTACCAAGCTGAACGAAGCAGCTCGATTGTAA 705 44.11 MAVARNRVLALAKGGSSRIPLRFQEAHYRCICRRFVSTDPSNSILNPQVLRLIQEPSSSVKSVLDSPENAFLGNSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDLIPKRAFEFSADLRTYEALIHGSVKSKCFDFAVRCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIWFESGEAEGMEEILTKLNEAARL 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2377508 2380273 + Cp4.1LG06g04550.1 Cpe06g00417 471197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00417 234 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Cpe06g00417 234 Gene3D Tetratricopeptide repeat domain 44 232 IPR011990 GO:0005515
Cpe06g00417 234 Pfam PPR repeat 134 163 IPR002885 -
Cpe06g00417 234 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 121 - -
Cpe06g00417 234 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 124 230 - -
Cpe06g00417 234 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 121 - -
Cpe06g00417 234 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 124 230 - -
Cpe06g00417 234 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00417 - - - csv:101208133 189.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00417 Cpe-Chr6:2377508 Cpe01g00243 Cpe-Chr1:1390163 6.60E-08 dispersed
Cpe06g00417 Cpe-Chr6:2377508 Cpe01g00533 Cpe-Chr1:3067650 1.27E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g335 . . . . . . . . . . . . Car09g00482 . . . Cpe06g00417 . . . . . . . . . . . . . . . . . . Lsi04g02221 Csa03g04433 . . . . . . . . . . Sed13g2118 . Cmo09g00540 Cma09g00550 . . . . . Bhi09g02414 Tan01g3775 Cmetu04g1652 . Hepe01g2115 Mch11g0653 . . . . . . . . . . . Cme04g00298
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013351 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00417 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0