Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00424 TTCAGACTCAAAAACTCCAAGAAGAACAAGAAGGTGAAGCGACGTCGCACGGAAGGAGGTGCAAAAGCGCAGCCCAGTTTTCCCCCGGTACAGGTTCGAGCCATTGTTTTGGGTTGGGAATTTGATGGTGCAGTTGGTGAATTTGGAGAGGGTTTGATTCGGATTCAGCTGATGGATAAGCTGTGCTGTTTTAATGCTTCATACTCTCGGTATGGATTCTGCCTGGTGAAAGGGAAAGCTAACCATCCCATGGAAGATTACCATGTTGCTAAGTTCGTTCAAATTCAAGAACATGAACTGGGGCTGTTTGCTATCTACGATGGCCATGTTCAACAAACTGTGCCTGCTTACTTACAAAAGCATCTCTTTTCTAATATCCTCAAAGAGGAGGACTTTTGGGTCGACCCGAACAGCTCCATCTCGAAAGCCTACGAGAAAACGGACCAGGCGATTCTATCTCACAGCTCTGACTTGGGTCGTGGCGGATCAACCGCTGTTACTGCTATTCTGATTAACGGTCAACGACTATGGGTGGCCAACGTCGGAGATTCACGCGCTGTTCTTTCGAGAGGCGGTGAAGCTATACAAATGACCATTGATCACGAGCCGAATGCTGAACGCAGTATCATCGAGAATAAAGGTGGCTTCGTTTCTAACATGCCAGGAGACGTACCTCGAGTGAACGGTCAGCTAGCGGTTTCGCGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTACGATCGGATCCCGACATACGTGATATTAACATAGACGCCAACACGGACGTATTAATTCTCGCTAGCGATGGTCTTTGGAAGGAGGACTTTTGGGTCGACCCGAACAGCTCCATCTTGAAAGCCTACGAGAAAACGGACCAGGCGATTCTATCTCACAGCTCTGACTTGGGTCGTGGCGGATCAACCGCTGTTACTGCTATTCTGATTAACGGTCAACGACTATGGGTGGCCAACGTCGGAGATTCACGCGCTGTTCTTTCGAGAGGCGGTGAAGCTATACAAATGACCATTGATCACGAGCCGAATGCTGAACGCAGTATCATCGAGAATAAAGGTGGCTTCGTTTCTAACATGCCAGGAGACGTACCTCGAGTGAACGGTCAGCTAGCGGTTTCGCGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTACGATCGGATCCCGACATACGTGATATTAACATAGACGCCAACACGGACGTATTAATTCTCGCTAGCGATGGTCTTTGGAAGGTCATGTCGAATCAAGAAGCGGTCGATATCGCACGAAGAATCAAGGACCCGATGAAGGCTGCAAAGCAGTTAATAACAGAGGCTTTGCTGAACGAGAGTAAAGACGACATATCGTGCATTGTCTGGGTTGCATTTTCAGCAGAATCATCTTCTTCCCTAAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAACTAGAACCCTGTCTTTCAATTGACGTGGTCGGGGATGACAATGATTCAGATACTTTCTTCCCGCGAACTCCAGAGCGAACTGCAACTCACACACCCCGACGTGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCATCATTGGGTCGCTCAATTCTTCCTCAACCGTGGCTCACATCTCTGGCATTGGCTTAAAAGCCATACCCACAATCTCGCACCTATCCGGTCTTAGATCTGTCAACTTGTCTGGAAATCTCATAGATCACATTAACCCTGGATCACTGCCCAAGGGATTGCATACTCTTAACTTGTCCAGGAACAAGATCAGTGCCATTGAAGGACTCAAAGAATTAGCACGACTTCGGATACTCAATCTGAGTTACAATCGTATATCTCACATTGGACATGGGTTGTCAAACTGTGCGATTATGAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGATGGACTGCATCGACTCTTGAAGCTCACGGTTCTCGACCTAAGCTTCAACAAGATTTCAACAAACAAATCTCTGGCCCAACTTGTTGCCAACTACAACTCTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCAGTTGTTGGCCTTCTTCCAAGTCTTGTTTATCTAAACAAGCAGCCCATCAAAGCACAGAGAGCTCGAGAAGTCGCAACTGACAGCGTTGCCAAAGCTGCACTAGGGAACGGTAGTTGGTGTTCTCATAGAAGAACATCAAGGAAAACGAGCCATATAGCACCATCGTCATCTTCCATCAGTGGGCACAGGAGTAGTGCAAGTGTTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCTTACGCCATTCTTCTCTGGGGATGGATTCATCAGCCCTTCCATCATCATCATCTCGTTAG 2391 47.34 FRLKNSKKNKKVKRRRTEGGAKAQPSFPPVQVRAIVLGWEFDGAVGEFGEGLIRIQLMDKLCCFNASYSRYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHVQQTVPAYLQKHLFSNILKEEDFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAIQMTIDHEPNAERSIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANTDVLILASDGLWKEDFWVDPNSSILKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSRGGEAIQMTIDHEPNAERSIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDANTDVLILASDGLWKVMSNQEAVDIARRIKDPMKAAKQLITEALLNESKDDISCIVWVAFSAESSSSLRRVDEWVKDLQLEPCLSIDVVGDDNDSDTFFPRTPERTATHTPRRGEPNLTEEILYANSIIGSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIDHINPGSLPKGLHTLNLSRNKISAIEGLKELARLRILNLSYNRISHIGHGLSNCAIMKELYLAGNKISDVDGLHRLLKLTVLDLSFNKISTNKSLAQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVVGLLPSLVYLNKQPIKAQRAREVATDSVAKAALGNGSWCSHRRTSRKTSHIAPSSSSISGHRSSASVAHKGRHRSKAPTLRHSSLGMDSSALPSSSSR 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2422845 2429837 + Cp4.1LG06g04380.1 Cpe06g00424 471204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00424 796 ProSiteProfiles Leucine-rich repeat profile. 626 647 IPR001611 GO:0005515
Cpe06g00424 796 SUPERFAMILY PP2C-like 277 458 IPR036457 -
Cpe06g00424 796 MobiDBLite consensus disorder prediction 736 796 - -
Cpe06g00424 796 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 69 273 - -
Cpe06g00424 796 SMART PP2C_SIG_2 194 462 IPR001932 -
Cpe06g00424 796 SMART LRR_typ_2 646 671 IPR003591 -
Cpe06g00424 796 SMART LRR_typ_2 557 580 IPR003591 -
Cpe06g00424 796 SMART LRR_typ_2 601 624 IPR003591 -
Cpe06g00424 796 SUPERFAMILY Outer arm dynein light chain 1 548 715 - -
Cpe06g00424 796 ProSiteProfiles Leucine-rich repeat profile. 603 625 IPR001611 GO:0005515
Cpe06g00424 796 MobiDBLite consensus disorder prediction 1 26 - -
Cpe06g00424 796 Gene3D - 275 467 IPR036457 -
Cpe06g00424 796 Gene3D - 64 274 IPR036457 -
Cpe06g00424 796 Pfam Leucine-rich repeat 563 669 - -
Cpe06g00424 796 MobiDBLite consensus disorder prediction 747 762 - -
Cpe06g00424 796 CDD PP2Cc 70 272 IPR001932 -
Cpe06g00424 796 Gene3D Ribonuclease Inhibitor 623 719 IPR032675 -
Cpe06g00424 796 ProSiteProfiles Leucine-rich repeat profile. 581 602 IPR001611 GO:0005515
Cpe06g00424 796 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 274 462 - -
Cpe06g00424 796 MobiDBLite consensus disorder prediction 1 17 - -
Cpe06g00424 796 MobiDBLite consensus disorder prediction 780 796 - -
Cpe06g00424 796 PANTHER PROTEIN PHOSPHATASE 2C 274 462 IPR015655 GO:0004722|GO:0006470
Cpe06g00424 796 ProSitePatterns PPM-type phosphatase domain signature. 102 110 IPR000222 GO:0043169
Cpe06g00424 796 Pfam Protein phosphatase 2C 79 273 IPR001932 -
Cpe06g00424 796 Pfam Protein phosphatase 2C 280 454 IPR001932 -
Cpe06g00424 796 Gene3D Ribonuclease Inhibitor 519 622 IPR032675 -
Cpe06g00424 796 SUPERFAMILY PP2C-like 67 273 IPR036457 -
Cpe06g00424 796 SMART PP2C_4 273 459 IPR001932 -
Cpe06g00424 796 SMART PP2C_4 66 272 IPR001932 -
Cpe06g00424 796 MobiDBLite consensus disorder prediction 497 516 - -
Cpe06g00424 796 PANTHER PROTEIN PHOSPHATASE 2C 69 273 IPR015655 GO:0004722|GO:0006470
Cpe06g00424 796 CDD PP2Cc 284 458 IPR001932 -
Cpe06g00424 796 ProSiteProfiles PPM-type phosphatase domain profile. 70 461 IPR001932 -
Cpe06g00424 796 SMART LRR_sd22_2 646 667 - -
Cpe06g00424 796 SMART LRR_sd22_2 624 645 - -
Cpe06g00424 796 SMART LRR_sd22_2 601 623 - -
Cpe06g00424 796 SMART LRR_sd22_2 579 600 - -
Cpe06g00424 796 ProSiteProfiles Leucine-rich repeat profile. 648 669 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00371 Cpe06g00424 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00354 Cpe-Chr1:2039516 Cpe06g00424 Cpe-Chr6:2422845 2.38E-97 dispersed
Cpe04g01361 Cpe-Chr4:11083713 Cpe06g00424 Cpe-Chr6:2422845 5.28E-08 dispersed
Cpe06g00424 Cpe-Chr6:2422845 Cpe14g00210 Cpe-Chr14:1175110 2.81E-96 dispersed
Cpe19g01168 Cpe-Chr19:7841543 Cpe06g00424 Cpe-Chr6:2422845 9.50E-09 dispersed
Cpe15g00773 Cpe-Chr15:7890721 Cpe06g00424 Cpe-Chr6:2422845 1.57E-74 transposed
Cpe02g00371 Cpe-Chr2:2042955 Cpe06g00424 Cpe-Chr6:2422845 2.30E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00424 - - cmos:111443155 618.231