Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00429 ATGCAACCTGAAGACTCGAAACCCCCAGAATTCCCAATCCCTTCGCCCAATTTCCGCGCTCCGACTCAGCGTCCTACTCCGGCGGCCAGTATTCCGGTTGATGTCCGTCCTAACCAGTCATTGATTCTTTCTCCGGTCCCTCAGCCCCAAAGAGTCTCTGTCGTCTCTCCCCCTTACCATTTCCAAGTTCCTTCCAAAAGAATCCGTTCTCCCGATGATCTCCGCCACTTCCACGATTCCGATTCCGGAAGAAATTTTATTGGTTTTATTGTCGCTCTGTCTGAATCCACTCGAGGCCGGAAAATTTCAGATCCGTGTTACGCATCTGATACCGTTAATTCCATCGTCTCGATTCTTGATACTCTGATTCAGTGGATCGATGATATACCACCGGCGCGTATGGCGTCTCGATATGGAAACCTTTCTTATCGGACATGGCATGCGCGAATGGTGGAAAACAGCGATTCTCTTATGCTTCGATTTCTCCCCGAGGATCTTCATTCAGCCACAGTGGAAATTGTACCTTATTTCACTGATAGCTTCGGGAATTCGACGCGAATCGACTATGGTACTGGGCACGAGACACAATTCGCAGCCTGGCTGTATTGCTTGGCGAAATTGGGGATAATCAAAGAGGAGGATTACCCTGCTGTTGTCGTTAGGGTTTTCGTGAAGTACCTCGAGTTAATGAGGAAATTGCAGTTGGTGTACTGTTTGGAGCCTGCGGGTTCCCATGGTGTTTGGGGCCTTGATGACTACCATTTCTTGTCGTTCGTTTTCGGATCATCACAGTTGATAGATCATAAGTATCTGAAACCTAAATCCATTCACAGTCAGGATATACTAGACAGTTTTTCAAACGATTATCTTTACTTCTCGTGTATTTCCTTCATAAAGAAGGTGAAGAAGGGTCCATTTTCAGAGCATTCGCCATTGCTTGATGATATTAGTGGGGTGCCTACTTGGAACAAGGTTAATAGTGGGTTGCTGAAGATGTACAAGGTGGAAGTATTGGAGAAAGTTCCCATTATGCAGCACTTTCTCTTTGGATGGCTCATCAAATGA 1065 46.2 MQPEDSKPPEFPIPSPNFRAPTQRPTPAASIPVDVRPNQSLILSPVPQPQRVSVVSPPYHFQVPSKRIRSPDDLRHFHDSDSGRNFIGFIVALSESTRGRKISDPCYASDTVNSIVSILDTLIQWIDDIPPARMASRYGNLSYRTWHARMVENSDSLMLRFLPEDLHSATVEIVPYFTDSFGNSTRIDYGTGHETQFAAWLYCLAKLGIIKEEDYPAVVVRVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLSFVFGSSQLIDHKYLKPKSIHSQDILDSFSNDYLYFSCISFIKKVKKGPFSEHSPLLDDISGVPTWNKVNSGLLKMYKVEVLEKVPIMQHFLFGWLIK 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2458900 2462547 + Cp4.1LG06g04370.1 Cpe06g00429 471209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00429 354 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 64 353 IPR004327 GO:0019211
Cpe06g00429 354 Gene3D - 250 354 IPR043170 -
Cpe06g00429 354 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR 42 354 - -
Cpe06g00429 354 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 42 354 IPR004327 GO:0019211
Cpe06g00429 354 MobiDBLite consensus disorder prediction 1 31 - -
Cpe06g00429 354 CDD PTPA 86 350 IPR004327 GO:0019211
Cpe06g00429 354 SUPERFAMILY PTPA-like 56 353 IPR037218 GO:0019211
Cpe06g00429 354 MobiDBLite consensus disorder prediction 1 21 - -
Cpe06g00429 354 PIRSF PTPA 52 354 IPR004327 GO:0019211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00429 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - zju:107420767 555.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00429 Cpe11g00444 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00367 Cpe-Chr2:2021105 Cpe06g00429 Cpe-Chr6:2458900 2.61E-59 dispersed
Cpe11g00444 Cpe-Chr11:2510022 Cpe06g00429 Cpe-Chr6:2458900 0 wgd
Cpe02g00366 Cpe-Chr2:2014221 Cpe06g00429 Cpe-Chr6:2458900 1.29E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g425 . . . . . . . . Cmo05g00531 . . Cma09g00565 . . . Cpe06g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00554 . . Car05g00454 . Cpe11g00444 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003204 2 3 1 1 1 1 1 2 2 1 1 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 3 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00429 Cpe_Chr06 FPKM 11.961431 11.907681 8.529519 8.761895 7.427039 6.799788 7.877264 8.855952 7.645355 8.274037