Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00446 ATGAGAGTGGACCAATCTGAAGAAATGTCTGAAGACGAAGATCGATCTTTACCTTCAGATCTAGCCGGCGATGCCATAGCCGAATCTGTAAGTAAAGCTCGTAATTGCGTAGGGTGTTCTGGTGATGTAGCTGGTTCTGATTCTGGTTCTGTTGAGAATATACTTCATAATGTTCTTGAGAACGTGCTTCACTTCCTTACTTCTCGGCGTGACCGGAACGCGGCGTCGCTCGTCTGTAAGTCGTGGTATCGCGTTGAGGCACTCACTCGATCTGAACTCTTCATTGGAAATTGCTATGCTGTTTCACCTCGCCGAGTCACGTCGCGGTTTAATCGAGTTCGGTCAGTTATGATCAAAGGGAAGCCTCGGTTTGCAGATTTCAACCTGATGCCGCCCAATTGGGGGGCTCACTTCTCCCCATGGGTGGCGGCCATGGCCAAATCATATCCTTGGCTCGAGACTGTCTATTTGAAGCGCATGTCTGTGACTGACGACGATCTCGCCCTGCTCGCTGACTCTTTTCCTGGCTTTAAGGAGCTTGTGTTGTTTTGCTGCGAAGGATTTGGCACTAGTGGTATTGCTGTTGTTGCCTCCAGATGCATGCACCTTCGAGTACTTGATCTGATTGAATCTGACGTAACAGACGATGAAGTGGATTGGATATCTTGTTTCCCGGAGAAGGAAACTTGTCTTGAATCTCTGATGTTTGATTGTATAGAGTGCCCTATTAATTTTGAGGCACTGGAGAGGTTGGTGAGTAGATCCCCATCCTTGAAAAAACTTGGGGTGAATCGTTACGTTTCCATTGCTCAGCTATACCGCTTGATGATTCGGGCTCCTCATCTAACACATCTTGGAACTGGTTCGTTCAGTACTTCAGAGGCTGTGGTTCATGGGGAATCAGAGCCTGATTATGCCTCTGCTTTTGCTGCTTGCAAATCCTTGGTTTGTCTCTCTGGATTCAAGGACATTTTACCTGATTACCTACCTTGTATCTATCCAGTTTGTGCTAATCTCACCACTCTGAACTTGAGCTTTGCAAATATAACTGCTGAACAACTCAAACCAGTTATAAGCCACTGCCACAAGCTCCAGACTTTCTGGGCTCTTGATTCGATATGCGATGAAGGACTTCAGGCTGTTGCTTCAACGTGCAAGGAATTGCGAGAACTTCGGGTTTTTCCTGTTGATGTGCGAGAAGATGGTGAAGGCCCCATTTCTGAAGTGGGCTTCCAGGCGATATCCGAGGGTTGCAGGAAATTGCAATATATCCTCTACTTTTGCCAGAGAATGACCAATGCAGCTGTGGTAGCTATGTCACAGAACTGCCAAGATCTCGTGGTGTTTAGACTATGTATTATGGGACGACACCAGCCAGACCATCAAACTGGAGAACCCATGGATCAAGGATTTGGTGCAATCGTTATCAACTGTAAGAAGCTTACTAGGCTTGCTATATCTGGATTATTGACTGATCGTGCTTTCAGCTACATTGGGAAGTATGGAAAACTGGTACGCACCCTATCAGTTGCTTTTGCTGGAAATAGTGATTTGGGATTGAAATATGTGCTTGAGGGTTGTCTTAGATTGCAAAAACTTGAGATTAGAGATAGCCCATTTGGCGATGGAGCCTTGCGATCTGGTTTACATCATTATTATAATATGAGATTCCTCTGGATGTCAGCTTGTAAACTGTCTCGCCAAGGCTGCCAAGAGGTTGCCAGAGCGATGCCTCACTTAGTTGTTGAGGTGATGAGGAATGAAAATGACGACGAAACTGAAAGCAGTGTCGAGGTGGAGGGTATGGAGAACCATGTTCAGGTGTTATACATGTATAGATCTCTTGAGGGGCCAAGGGATGATGCTCCAAAGTTTGTTGACATCCTATAG 1890 45.98 MRVDQSEEMSEDEDRSLPSDLAGDAIAESVSKARNCVGCSGDVAGSDSGSVENILHNVLENVLHFLTSRRDRNAASLVCKSWYRVEALTRSELFIGNCYAVSPRRVTSRFNRVRSVMIKGKPRFADFNLMPPNWGAHFSPWVAAMAKSYPWLETVYLKRMSVTDDDLALLADSFPGFKELVLFCCEGFGTSGIAVVASRCMHLRVLDLIESDVTDDEVDWISCFPEKETCLESLMFDCIECPINFEALERLVSRSPSLKKLGVNRYVSIAQLYRLMIRAPHLTHLGTGSFSTSEAVVHGESEPDYASAFAACKSLVCLSGFKDILPDYLPCIYPVCANLTTLNLSFANITAEQLKPVISHCHKLQTFWALDSICDEGLQAVASTCKELRELRVFPVDVREDGEGPISEVGFQAISEGCRKLQYILYFCQRMTNAAVVAMSQNCQDLVVFRLCIMGRHQPDHQTGEPMDQGFGAIVINCKKLTRLAISGLLTDRAFSYIGKYGKLVRTLSVAFAGNSDLGLKYVLEGCLRLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSACKLSRQGCQEVARAMPHLVVEVMRNENDDETESSVEVEGMENHVQVLYMYRSLEGPRDDAPKFVDIL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2585058 2588422 - Cp4.1LG06g04140.1 Cpe06g00446 471226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00446 629 SUPERFAMILY RNI-like 78 592 - -
Cpe06g00446 629 Pfam Transport inhibitor response 1 protein domain 112 157 IPR041101 -
Cpe06g00446 629 Gene3D - 46 90 - -
Cpe06g00446 629 SMART LRR_CC_2 174 199 IPR006553 -
Cpe06g00446 629 SMART LRR_CC_2 478 501 IPR006553 -
Cpe06g00446 629 SMART LRR_CC_2 418 442 IPR006553 -
Cpe06g00446 629 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 45 628 - -
Cpe06g00446 629 SUPERFAMILY F-box domain 57 85 IPR036047 GO:0005515
Cpe06g00446 629 Pfam F-box 53 91 IPR041567 -
Cpe06g00446 629 Gene3D Ribonuclease Inhibitor 92 629 IPR032675 -
Cpe06g00446 629 PANTHER F-BOX PROTEIN FBX14 45 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00446 - - - csv:101206433 1159.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00350 Cpe-Chr2:1911941 Cpe06g00446 Cpe-Chr6:2585058 0 dispersed
Cpe06g00446 Cpe-Chr6:2585058 Cpe19g00992 Cpe-Chr19:6955510 0 dispersed
Cpe02g00349 Cpe-Chr2:1899502 Cpe06g00446 Cpe-Chr6:2585058 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g477 . Blo12g00720 . Bda03g00467 Bpe02g00131 Bpe04g00428 Bma04g00441 Bma01g02595 . . Cma01g01635 Cma09g00584 . . . Cpe06g00446 . . . . . . . . . . . . . . . Cone4ag1311 Cone7ag1254 . . Lsi04g02267 Csa03g04477 Chy04g00224 . Blo17g00104 . Bda11g00786 Bda13g01371 . Bpe14g00475 . Bma02g00121 Sed05g1571 Cmo01g01680 Cmo09g00571 . . . Car09g00514 . . Bhi09g02480 Tan01g3834 Cmetu04g2278 . Hepe01g2158 Mch11g0695 . Cla11g01410 Cam11g1467 Cec11g1495 Cco11g1491 Clacu11g1628 Cmu11g1445 Cre11g1864 . . . Cme04g00250
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001591 5 2 2 4 3 0 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00446 Cpe_Chr06 FPKM 7.549568 8.078613 6.841195 6.322489 13.203295 10.206652 13.252051 12.662732 10.781682 12.636017