Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00448 ATGGAGGACTTCGCCTTTCACGATGGTAACGTTTGCGGTTTGCTCGAGAGCAGGCACATCAACTTTCGTCAAGATCCCACCTATAGTTTGCCGATGCACTCATCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGTTTCGTAAATTAAATTCTGCTCCCCCCCACCTCCCAAACTCTCTCCAGGGGCACCAGGGGTGTGTCAATGCAGTGGCCTGGAATTCTCGTGGTTCGCTTTTGATATCTGGATCAGATGATACGCGGATCAACATTTGGAGCTATTCTGGTCAAAAGCTATTGCACTCTGTGGAAACTGGGCATTCTGCAAACATATTTTGTACAAAATTTGTTCCTGAAACTTCTGATGAGCTTGTGGTCTCAGGAGCTGGGGATGCAGAGATTGATTTGCGGTGTGGAGCAAAGAGGTCACTTGCTGATCCTCCCAGACAAACCCTTGCTTTGAAATCCTGTGACATTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGACGCATTTGCACGGTTATATGATAGAAGGATGTTGCCACCCTTGTCGTCCAGCCAGAAAAGGATGTCGCCACCTCCTTGTGTTAACTACTTTTGCCCAATGCATCTCTCTGAACGGGTTCGACCGGGTTTGCATTTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATCCTTCTTAGCTATAGTGGAGAACATGTATACTTGATGAATGTAAATCATGCTGGTTTAGGTACAATGCAGTATACATCAGGAGATGTTTCTAAATTAATGAGTTTCACTCCCATACTCAACGGATTGGAATTGCAGCATCCTGTTCCGAATCTTTCTAACGGCTTGCCTTTAAATGGTGGTGTTAATGCGAAGCTTGATAAATGCAGAAAATTATTACAAATTGCTGAAAAATGCTTGGAGGGTGGCAACTACTTCGGTGGAATTGAGGCATGTAATGAAATTTTGGATGGATTTGGTCGTATTATTGGAGTTATTCTCAAGCACGATTCATTATGCACACGTGCTGCTTTATTGCTCAAGCGGAAGTGGAAAAATGATGTTCATATGGCCATAAGAGATTGTTACAGTGCTAGGAAAATAGATAATTCTTCTTTCAGAGCACATTACTACATGTGTGAAGCTCTATCACAGCTAGGTAGACATAAGGAAGCCCTAGATTTTGCCTTTGCTGCTCAGTGTTTAGCCCCATCTAATCCCGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGGGACCTCGCTGCAGCTGAATTGGAAAAATCAAATAAAGACAATGATGGAGCTATAAGATCAGCACCGTTAGGTGGTGTATTATCATTAAGTGACCTTCTTCACCGCTCAGATGCAAACAGTGATGTTTCACAAGATGGGGTGAGATCAGAAAGAGAAGATTCTGACTATGATGACGAGGTGGAGCTGGACTTTGAAACCTTATCAGGTGATGAAGCCCAAGACGTCGATTCTAACGTTCTACATGGAAGTGTAAATCTTAGAATACATAGACGAGTTGATCCAGCAATAGAAAGGGTTGGCGCGAATGGCTCCTGTGGGTCTCCTTCATCGTCACACAATGATGGAATACTCTATCAGCCTGAACCTGTCATTGATATGAAGCAAAGATATGTCGGTCATTGCAATATCGGAACTGATATTAAACAAGCTAGTTTTCTTGGGCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGACGGGAGATGGTTTATTTGGGAGAAGAAAACTGGTAGACTGATTAAAATTCTTGTTGGAGATGGAGCTGTCCGATCAGTCGTAGCCGGTGGAGGGATTGGACCGCAGGCTGCCGATGTGTTGGCTGCAATAGAGAACAATCAGCGCCGACTCTGCCGTAATAGAGAAGCCATACTGCCTTTTGAAATTTTAGAGCGGTTTAGGATGCATGATTTCTCAGAAGGAAGCCTTCATCCATTTGAATGTGCTCAGAGTTGA 1995 43.81 MEDFAFHDGNVCGLLESRHINFRQDPTYSLPMHSSFIQRLSQEKELEFRKLNSAPPHLPNSLQGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYSGQKLLHSVETGHSANIFCTKFVPETSDELVVSGAGDAEIDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSERVRPGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHAGLGTMQYTSGDVSKLMSFTPILNGLELQHPVPNLSNGLPLNGGVNAKLDKCRKLLQIAEKCLEGGNYFGGIEACNEILDGFGRIIGVILKHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDNSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNPEVAEKVESVKRDLAAAELEKSNKDNDGAIRSAPLGGVLSLSDLLHRSDANSDVSQDGVRSEREDSDYDDEVELDFETLSGDEAQDVDSNVLHGSVNLRIHRRVDPAIERVGANGSCGSPSSSHNDGILYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKKTGRLIKILVGDGAVRSVVAGGGIGPQAADVLAAIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2596156 2609129 - Cp4.1LG06g04180.1 Cpe06g00448 471228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00448 664 Gene3D Tetratricopeptide repeat domain 291 440 IPR011990 GO:0005515
Cpe06g00448 664 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 26 137 IPR045151 -
Cpe06g00448 664 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 135 603 - -
Cpe06g00448 664 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 26 137 - -
Cpe06g00448 664 SMART WD40_4 141 181 IPR001680 GO:0005515
Cpe06g00448 664 SMART WD40_4 55 94 IPR001680 GO:0005515
Cpe06g00448 664 SMART WD40_4 97 139 IPR001680 GO:0005515
Cpe06g00448 664 SMART WD40_4 544 587 IPR001680 GO:0005515
Cpe06g00448 664 SUPERFAMILY WD40 repeat-like 58 606 IPR036322 GO:0005515
Cpe06g00448 664 Pfam WD domain, G-beta repeat 61 94 IPR001680 GO:0005515
Cpe06g00448 664 Gene3D - 39 268 IPR015943 GO:0005515
Cpe06g00448 664 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 135 603 IPR045151 -
Cpe06g00448 664 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Cpe06g00448 664 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 103 IPR001680 GO:0005515
Cpe06g00448 664 Coils Coil 416 436 - -
Cpe06g00448 664 MobiDBLite consensus disorder prediction 459 480 - -
Cpe06g00448 664 SUPERFAMILY TPR-like 299 414 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00448 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - csv:101206836 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00448 Cpe-Chr6:2596156 Cpe10g00519 Cpe-Chr10:3042569 9.04E-08 dispersed
Cpe15g00612 Cpe-Chr15:6810584 Cpe06g00448 Cpe-Chr6:2596156 8.65E-09 transposed
Cpe16g00563 Cpe-Chr16:6425266 Cpe06g00448 Cpe-Chr6:2596156 1.55E-07 transposed
Cpe02g00348 Cpe-Chr2:1885014 Cpe06g00448 Cpe-Chr6:2596156 4.56E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00448 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0