Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00454 ATGGATTGCTTGACCTCCTACTTTTTACCCGCCACATTAGCCTTCTCTAAGTCCTCCGTTTCAGCTTCTAAGCTGCCATTTTTCGCCGCCGCTCGTGGAGCCTTGCCGGTGTTTGGTGTTCTCAGAGCCTCTCGTACCGCCGATGCGCCGCTGTCCGTCGACGATTCGCCGGAAAACCGCGATGATAAGGAGGTTAAACTTTGGGGCGGTCGTTTCGAGGAGAGCGTTACCGATGCGGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATCAGAGGGAGTCGAGCTCATGCTTCAATGCTAGCTAGTCAGGGATTGATGAGTGTTGCTGAAAGGGACAGTATCATTGAAGGTTTGGATGAAATTGAGAGGCGAATTGAAAGTGGTGATTTTGTTTGGAGAACGGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGATATGATTGGTGAACCTGCGAAGAAGCTACATACAGCTCGAAGCCGCAACGATCAAGTTCTAACTGATTTTCGATTGTGGTGCCGGGATGCAATTGATGCTATATTAGATGCTATTAGGTACCTTCAAGTTTCCATGGTAACTCTGGCATTGAAGAACGAGGGATTAATCGTTCCGGGCTATACTCATTTACAAAGAGCGCAACCGGTTCTACTTCAGCATCTTCTCTTAGCCTTTGTTGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACTGGCCTTCCTATTGATCGTTTTATGACTGCTGAGGCTTTAGGGTTCACCGCTCCCTTGAGAAATAGTATCGATGCAGTTTCAGATCGAGATTTTGCCTTGGAATTTCTTTCTGCCAATGCCATCACCGCCATCCATCTTTCAAGGCTAGGAGAAGAATGGGTGCTGTGGGCTTCCGAAGAGTTCGGATTCATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCCGATCCGATGGAACTTGTTCGTGGGAAGTCGGCTAGAGTCATCGGAGACTTGGTCACCACTCTCACTTTATGCAAAGGTCTGCCTTTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTCGACAGCGTAAAAACAATATTGGGGATGCTCGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCGTTCAATCGGGAGAGAATCGAAAAGGCTTTACCTGCTGGTTATCTCGACGCCACAACACTTGCCGATTACCTCGTGAAGAAGGACTTGAGTCTGGATGAGCTAAGAAGCATAAGTCCAGTATTTGAAGAGGACGTTTATGAGTTTCTCGGGGCCGAGAACGCGATTAATAAATTTTGTTCGTATGGTTCCACAGGAGCTGCCTGTGTTGCTACTCAAATGGAATACTGGATCTGGTTTGCAAGCCATCTGGAAATGGCTGTTTTCAAGTCCAAGATCCTGCAGTGCAAGCATTCTGGGGCCACAGGTACGAGTTCTAGGCAGAGTATGATGGATAACTGTGGGTTGAAATTAGGATATATTAAGACCCGCCAATTTCGGGAAGAATCGGAGGAAAATTTGATGGAAAATTCCAACAAGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAGAAACTCTTGCACAACCGTGATTTCACAGGCTCCAAAGATTTCGCCATCTTAGCTCAAGAAACAGAGCCTCTTTTGGTTGGCTCCGATCAGATCTTAGCGGTTGCGGATGTGTTATTGGCATCGGAGAAGCGAATCAACAACCACAATGATTGGTATTCGATTCTTCAGGTTGAACGGCAATCTGATGATTCGGATCTCATCAAGAGGCAGTATCGGAGACTCGCGTTACTTCTACATCACGACAAGAACAAATTTCCTTACGCTGATCAAGCTTTCAAGCTGGTTGCAGATTCGTGGGCTGTATTGTCCGACCACTCGAAGAAATCACTTTATGATAATGAGCTCAGTCTCTCTGCTAAGATCGATTTGTCCCAGCAGAACAAATTTCCGGTGCGCCGAAGCCAACGATCCAGTTGGAAGAAAGAGCACGAGTTTGAGAGTAACGATGGCGCCAAGGCCGATCAATCTCCAAATCAGCGGGTGAAATTATCGAGTTTCTGGACCGCTTGCCCTTACTGTTATGTGTTATTGGAGTATCCTAGGGTTTATGAGGGTTGCTGTTTGCGGTGTCAGAATTGCAAGAGGGCATTTCAGGCGGTGTTGCTTCCGTCTCTTCCGCCGCTCGTTCAGGGCCAGGAAGCCTACTATTGCTGCTGGGGTTTCTTTCCGATGGGGTTTGCCGCTCAAATTCCCGAGAAAGGTGGGAAGGGTGGCGAAACAGCTGCACCTGCGACAGCGTTCCCCAATTGGATGCCCCCAATATTCTCCAACAAGCCGCAAGAAACTAGTGGGAATGGAGAAACTGCGGCGGCGGAGGAGACGGTGACAGGTAGTGAAAGAGCGGCGGCGGTTGCTAGGACTCCGATTGGAAGAGGGGCAGGCCGCGGAAACCGCCGACTGCAGCCTAACTGCTTAAGCGTTGCTCTTCTTCTATCCGTCGTCAGCATCGACCTAGTACAATTGGCTATGGCGAAGTTCTTCCCTCCAATCAATGCTGGATTTCTGTTCGACTTCAGTCGGTGCGAGGTGTTTGGAGGTGAGCTAAAGTGGAATGACGGAAAT 2751 48.24 MDCLTSYFLPATLAFSKSSVSASKLPFFAAARGALPVFGVLRASRTADAPLSVDDSPENRDDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHASMLASQGLMSVAERDSIIEGLDEIERRIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILDAIRYLQVSMVTLALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKDLSLDELRSISPVFEEDVYEFLGAENAINKFCSYGSTGAACVATQMEYWIWFASHLEMAVFKSKILQCKHSGATGTSSRQSMMDNCGLKLGYIKTRQFREESEENLMENSNKVEAERLLGIAEKLLHNRDFTGSKDFAILAQETEPLLVGSDQILAVADVLLASEKRINNHNDWYSILQVERQSDDSDLIKRQYRRLALLLHHDKNKFPYADQAFKLVADSWAVLSDHSKKSLYDNELSLSAKIDLSQQNKFPVRRSQRSSWKKEHEFESNDGAKADQSPNQRVKLSSFWTACPYCYVLLEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWGFFPMGFAAQIPEKGGKGGETAAPATAFPNWMPPIFSNKPQETSGNGETAAAEETVTGSERAAAVARTPIGRGAGRGNRRLQPNCLSVALLLSVVSIDLVQLAMAKFFPPINAGFLFDFSRCEVFGGELKWNDGN 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2642771 2651802 - Cp4.1LG06g04060.1 Cpe06g00454 471234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00454 917 CDD DnaJ 613 667 IPR001623 -
Cpe06g00454 917 CDD Argininosuccinate_lyase 86 489 IPR009049 GO:0004056|GO:0042450
Cpe06g00454 917 Gene3D - 424 442 - -
Cpe06g00454 917 TIGRFAM argH: argininosuccinate lyase 67 440 IPR009049 GO:0004056|GO:0042450
Cpe06g00454 917 SUPERFAMILY L-aspartase-like 67 489 IPR008948 GO:0003824
Cpe06g00454 917 Gene3D - 86 293 IPR024083 -
Cpe06g00454 917 Hamap Argininosuccinate lyase [argH]. 66 491 IPR009049 GO:0004056|GO:0042450
Cpe06g00454 917 PANTHER ARGININOSUCCINATE LYASE 77 441 IPR009049 GO:0004056|GO:0042450
Cpe06g00454 917 SUPERFAMILY Chaperone J-domain 608 678 IPR036869 -
Cpe06g00454 917 PANTHER ARGININOSUCCINATE LYASE 441 489 IPR009049 GO:0004056|GO:0042450
Cpe06g00454 917 Gene3D DnaJ domain 601 699 IPR036869 -
Cpe06g00454 917 Pfam DnaJ domain 613 675 IPR001623 -
Cpe06g00454 917 ProSiteProfiles dnaJ domain profile. 613 678 IPR001623 -
Cpe06g00454 917 ProSitePatterns Nt-dnaJ domain signature. 655 674 IPR018253 -
Cpe06g00454 917 MobiDBLite consensus disorder prediction 821 835 - -
Cpe06g00454 917 MobiDBLite consensus disorder prediction 821 840 - -
Cpe06g00454 917 PANTHER ARGININOSUCCINATE LYASE 441 489 - -
Cpe06g00454 917 PANTHER ARGININOSUCCINATE LYASE 77 441 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 339 355 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 295 319 - -
Cpe06g00454 917 PRINTS Argininosuccinate lyase family signature 374 393 - -
Cpe06g00454 917 PRINTS Fumarate lyase superfamily signature 295 322 IPR000362 -
Cpe06g00454 917 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cpe06g00454 917 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cpe06g00454 917 PRINTS Fumarate lyase superfamily signature 339 355 IPR000362 -
Cpe06g00454 917 Gene3D Fumarase/aspartase (Central domain) 183 423 - -
Cpe06g00454 917 SMART dnaj_3 612 670 IPR001623 -
Cpe06g00454 917 ProSitePatterns Fumarate lyases signature. 339 348 IPR020557 GO:0003824
Cpe06g00454 917 PRINTS DnaJ domain signature 634 649 IPR001623 -
Cpe06g00454 917 PRINTS DnaJ domain signature 650 670 IPR001623 -
Cpe06g00454 917 PRINTS DnaJ domain signature 615 633 IPR001623 -
Cpe06g00454 917 Pfam Lyase 70 364 IPR022761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00454 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101205167 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00370 Cpe-Chr4:4327331 Cpe06g00454 Cpe-Chr6:2642771 3.64E-22 dispersed
Cpe06g00454 Cpe-Chr6:2642771 Cpe15g00374 Cpe-Chr15:4988108 2.03E-25 dispersed
Cpe11g00477 Cpe-Chr11:2744361 Cpe06g00454 Cpe-Chr6:2642771 0 wgd
Cpe02g00341 Cpe-Chr2:1837715 Cpe06g00454 Cpe-Chr6:2642771 0 wgd
Cpe06g00454 Cpe-Chr6:2642771 Cpe07g00171 Cpe-Chr7:1019219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe02g00341 . 7 278 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 57.2 3.5e-83 305.8
Cpe06g00454 . 549 829 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 55.6 2.9e-82 302.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020012 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00454 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0